PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g019450.1
Common NameMTR_4g019450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 602aa    MW: 67675.3 Da    PI: 7.2647
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g019450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-093804171954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Medtr4g019450.1 380 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 417
                      554459******************************88 PP
2BELL98.46e-32254318872
             BELL   8 kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       k++Ll++l+eV+krY+qy++q+q v+ sFe v gl++a+pY+slA ka+S+hFrcLk ai++q+
  Medtr4g019450.1 254 NKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQL 318
                      699***********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-39191316IPR006563POX domain
PfamPF075266.0E-36196315IPR006563POX domain
PROSITE profilePS5007112.098358421IPR001356Homeobox domain
CDDcd000861.84E-12361422No hitNo description
SMARTSM003891.5E-10361425IPR001356Homeobox domain
SuperFamilySSF466892.61E-17363428IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28364425IPR009057Homeodomain-like
PfamPF059204.6E-19378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MASDEGFEGY HVPQQSRRDK LRVVVAQNQQ PHETLLPFYD SSSFITNFTN QQGLKHNSCS  60
SSNSIKDLEC SNLMMRFSRE DQGKRVMNIS SSNPYFETLN NNQGNNNNPF LYQAQNIQNL  120
RQFDEQHSST STMMLNNHEP LSLSLSSNKS VSSNLPLELN LQRYGSMIYG GGGVIQGLVE  180
GGGSGGSVPF TGYASVLKDS RFLKPAQELL EEMCDVGNLG VCGEKVVVVA DSSLMMESPL  240
ERLSEEDPFG DGRNKSRLLT MLDEVYKRYR QYYQQMQSVV TSFEYVSGLN NAAPYASLAI  300
KAMSKHFRCL KKAITDQLQF NNKAHFHTSN RKEESPRFGN SERGGPYSHR SGYLEQQQPV  360
WRPQRGLPER AVTVLRAWLF EHFLHPYPTD TDKIMLAKQT GLSRSQVSNW FINARVRLWK  420
PMVEEIHMLE TRQAPKDSQQ NEENCRNKSS DHHHHLPSDT SLVSENPSTS TDKFHDSGYK  480
RAVNEIPNIP IRSQGQHQQQ QQQQMSLPFQ HVGVGMNIVG SGSNNSNHSS NNNSNVSLTL  540
GLYQNHGIGL AEPFPLSAAQ RFGLGLETNN EGNYVMSGFE SQNRHFGRDV IGGQMFHDFV  600
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15367425563Homeobox protein Meis2
3k2a_B1e-15367425563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174930.0leaf| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g019450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454907.10.0BEL1-like homeodomain protein 9
TrEMBLA0A072USU80.0A0A072USU8_MEDTR; BEL1-like homeodomain protein
STRINGXP_004507197.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-81TALE family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]