PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g019370.1
Common NameMTR_4g019370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 351aa    MW: 37642 Da    PI: 6.5124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g019370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-173883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v q+G ++W++Iar +  gR++k+c++rw + 
  Medtr4g019370.1 38 KGPWSPEEDAILSRLVSQFGARNWSLIARGIA-GRSGKSCRLRWCNQ 83
                     79******************************.***********985 PP
2Myb_DNA-binding58.12e-1890134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Medtr4g019370.1  90 RKPFTDEEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 134
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3753384IPR017930Myb domain
SuperFamilySSF466893.56E-3036131IPR009057Homeodomain-like
SMARTSM007174.9E-153786IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-263991IPR009057Homeodomain-like
CDDcd001671.89E-144082No hitNo description
PfamPF139211.9E-164198No hitNo description
PROSITE profilePS5129426.52485139IPR017930Myb domain
SMARTSM007172.2E-1789137IPR001005SANT/Myb domain
CDDcd001672.46E-1392135No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2492138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEPEQQPPTL TALHDGSGDE GLAALGEGGE GSSGSKVKGP WSPEEDAILS RLVSQFGARN  60
WSLIARGIAG RSGKSCRLRW CNQLDPSVKR KPFTDEEDRI IVAAHAIHGN KWAAIARLLP  120
GRTDNAIKNH WNSTLRRRGI GGVEHDNTKL ESGNMGGNIS LEKAKASSEE TLSCGDVNSL  180
KSSEGRDVSS MENVDDKNED KARTDVQLYH EVRDPPTLFK PVARVSAFNA YNAFNGSQPS  240
TSVPRPVPMQ GPILHSPKSD VEICKMLNGT IVDRSVPNQC GHGCCSSLNG NSSKSSLLGP  300
DFIEYSEPQS FTSFELAAIA TDISNLAWLK SGLENSSVKM MGDTAGRVNI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40371386107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g019370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454904.10.0transcription factor MYB1 isoform X1
SwissprotQ425751e-98MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A072UH070.0A0A072UH07_MEDTR; Myb transcription factor
STRINGGLYMA03G15810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.14e-88myb domain protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]