PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g008070.1
Common NameMTR_4g008070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 97aa    MW: 10933.3 Da    PI: 6.4111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g008070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-154580134
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34
                     C++C+ ++  Tp++Rrgp+g++tLCnaCGl+++ k+
  Medtr4g008070.1 45 CRQCNISEkcTPMMRRGPEGPRTLCNACGLMWANKE 80
                     ********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-63992IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-103988No hitNo description
Gene3DG3DSA:3.30.50.102.0E-134381IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.95E-84479No hitNo description
PROSITE patternPS0034404572IPR000679Zinc finger, GATA-type
PfamPF003203.8E-134580IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MQRNKGRFTS AKSKNDESAS AEMNCGTSEG LMADNDGSQQ QDYVCRQCNI SEKCTPMMRR  60
GPEGPRTLCN ACGLMWANKE KWEVLEDWPY NLRLYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.160918e-70flower| glandular trichome| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g008070.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637535.16e-53GATA transcription factor 28
SwissprotQ8H1G02e-29GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A072UFS77e-66A0A072UFS7_MEDTR; GATA type zinc finger transcription factor family protein
STRINGXP_004507018.16e-42(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.28e-32ZIM-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]