PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g467090.3
Common NameMTR_3g467090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 621aa    MW: 69732.6 Da    PI: 4.9674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g467090.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding316e-10569618147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + +WT  E+e l  +v+++G g+W+tI        + R + ++k++w++ 
  Medtr3g467090.3 569 KRKWTSLEEETLRAGVRMFGEGNWRTILDFYStifEYRNGVDLKDKWRNM 618
                      569*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.323564620IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-12565620IPR009057Homeodomain-like
SuperFamilySSF466898.58E-15565619IPR009057Homeodomain-like
SMARTSM007171.1E-4568620IPR001005SANT/Myb domain
PfamPF002495.3E-7569618IPR001005SANT/Myb domain
CDDcd116602.66E-16570620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MNENISNWIM EFLLRNTTVP DPLIQKTLTL LPLSGADSRL KKTLLLRVLQ THILNASISE  60
ASLQILEHLE EIYRDDGVSI SNAFQSAYCA VAVECTVKYL INSPEDPSGE YFSAVRRIWR  120
GRRGSGLVSD GFVQWGEEIE GALWDVRVAE RLVGLNTRRD AVIEVKRFLK EAWGSMGDSF  180
LDLIAMVSKG NGLCPGGVCE NAAEGSRRLL EGLGKAKAND DDVAMGENHG NRQLEENGLG  240
GGMSRRRNGR LEGLGKEKMN DDENDNVNDI VDDSDDNDDE TMMGENHGNE ELEERVGTSV  300
DANQEVEQRA GTSRMGDKGV CEIAEEGEDL RKRDGRLEGL GKEKMNDDGD DVNDNVDGDD  360
GVELMDGNRG NEQLEARVRT SGMRDKEIRK DNGQLKRKHS ALQTRHRGVK LSGDEEARPI  420
NFSTKYENLR SADVKKLRES LKSSSLELKA LVKDPLPDAL HTSEAVRSKL ATKDINRRPA  480
SEKQSEHVDV RDSDACKTIV PYQPNDANFA KEPSVPCSSD RPNCSNGSRP NYSNDRRPNL  540
MRRASYAQTY EWDDSIENLP QQSLPRRKKR KWTSLEEETL RAGVRMFGEG NWRTILDFYS  600
TIFEYRNGVD LKDKWRNMMR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.20140.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g467090.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460445.10.0uncharacterized protein LOC25491076
RefseqXP_024635390.10.0uncharacterized protein LOC25491076
TrEMBLA0A072UZD40.0A0A072UZD4_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004500362.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-15TRF-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]