PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g464290.1
Common NameMTR_3g464290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 472aa    MW: 52338.5 Da    PI: 6.5544
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g464290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-06147166626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+ f+  G C+ Gd+C++aHg
  Medtr3g464290.1 147 CHEFQN-GSCSKGDTCQYAHG 166
                      899999.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.54141168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4146167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRLQCVFLDA KKIPEKGCVL NYLCLSKPSP SFGAVSLLII CFLFHSLEDR KKLNQDCLKG  60
AGFEMVKQKQ HVGGPQTMKK DYRIDRSLPD IKNEVYITDE FRMYKFKVKL CSWDNAPHDW  120
TECPFAHSGE IARRRDPKKY YYSCVHCHEF QNGSCSKGDT CQYAHGVFES WLHPGASPVE  180
GLYTSSALPS PTSNSNSPSA SAMDSFTLRS PSSLIQSSSP PWNPSAASSP AGGTMWQTPT  240
RIHTTVPTLQ MSSNRLKAAL NARDNTDLNM KFLENRHMPK LIIEESNRLA GVNPTNHEDI  300
FGSSIQSSKD MLVHQNVNQE LCGYPSDLTN TNVIGSPEFR GSPFVNSRYD AFSNRSQSFF  360
ECSSVASFNS KLPSATSVAL EPSTAFSDWH SPDRKVDWSI PGDKLNEMTT SYSFGFLNDT  420
SNASTIAAAS NVDDHYALLS QESWVSSLVK DDDPTLESDQ LQCHNPDVVP S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g464290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634651.11e-172zinc finger CCCH domain-containing protein 29
TrEMBLA0A072V7Z80.0A0A072V7Z8_MEDTR; Zinc finger CCCH domain protein, putative
STRINGAES611011e-125(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.18e-43C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]