PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g464290.1 | ||||||||
Common Name | MTR_3g464290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 52338.5 Da PI: 6.5544 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5e-06 | 147 | 166 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd+C++aHg Medtr3g464290.1 147 CHEFQN-GSCSKGDTCQYAHG 166 899999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.54 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 146 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MRLQCVFLDA KKIPEKGCVL NYLCLSKPSP SFGAVSLLII CFLFHSLEDR KKLNQDCLKG 60 AGFEMVKQKQ HVGGPQTMKK DYRIDRSLPD IKNEVYITDE FRMYKFKVKL CSWDNAPHDW 120 TECPFAHSGE IARRRDPKKY YYSCVHCHEF QNGSCSKGDT CQYAHGVFES WLHPGASPVE 180 GLYTSSALPS PTSNSNSPSA SAMDSFTLRS PSSLIQSSSP PWNPSAASSP AGGTMWQTPT 240 RIHTTVPTLQ MSSNRLKAAL NARDNTDLNM KFLENRHMPK LIIEESNRLA GVNPTNHEDI 300 FGSSIQSSKD MLVHQNVNQE LCGYPSDLTN TNVIGSPEFR GSPFVNSRYD AFSNRSQSFF 360 ECSSVASFNS KLPSATSVAL EPSTAFSDWH SPDRKVDWSI PGDKLNEMTT SYSFGFLNDT 420 SNASTIAAAS NVDDHYALLS QESWVSSLVK DDDPTLESDQ LQCHNPDVVP S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g464290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634651.1 | 1e-172 | zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A072V7Z8 | 0.0 | A0A072V7Z8_MEDTR; Zinc finger CCCH domain protein, putative | ||||
STRING | AES61101 | 1e-125 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 8e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g464290.1 |
Entrez Gene | 25490903 |
Publications ? help Back to Top | |||
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