PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g464270.1
Common NameMTR_3g464270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 358aa    MW: 40439.9 Da    PI: 6.2351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g464270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-095175226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      + lC+ f+++G C+ Gd C +aHg
  Medtr3g464270.1 51 SYLLCHAFQKSGSCWKGDACEYAHG 75
                     5679********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.81E-64878IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3994977IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-54978IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-75175IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-45176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-481113IPR000571Zinc finger, CCCH-type
SMARTSM003561185108IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEQQQDDEF MMYRFKVERC YETSSHYFSE CSFVHPGENL KRRDPKQYNY SYLLCHAFQK  60
SGSCWKGDAC EYAHGAFESG LHPSRYRTMY CRNGTECRRE VCFFAHNHEE LRPLNATTSS  120
ALPPPTFYSN SPSASAMVPF TLSSPYALIQ SSSMPPWTPS AISYPAGRTM WPTPTQIRTT  180
VPTPQMPSNS LNARDNTHLD MKFFEYHNMP NLMMEGSSRL AGVNPTNLEG YFGSSIQSPT  240
AMQGYQNVNQ QLQRYPSQLT NSNVVRSQQF RFYPILNSRY DALSKQSQNF IESSSMASFN  300
SMLPDATSVT LEPSTSFSGL RSRDRKLELG DTSNTSTMAA ASNVDEPDVG WVDELVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g464270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460262.10.0zinc finger CCCH domain-containing protein 47
TrEMBLA0A072UYW30.0A0A072UYW3_MEDTR; Putative transcription factor C3H family
STRINGXP_004500271.17e-93(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.12e-56salt-inducible zinc finger 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]