PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g464270.1 | ||||||||
Common Name | MTR_3g464270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 40439.9 Da PI: 6.2351 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9e-09 | 51 | 75 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + lC+ f+++G C+ Gd C +aHg Medtr3g464270.1 51 SYLLCHAFQKSGSCWKGDACEYAHG 75 5679********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.81E-6 | 48 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.399 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 49 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-7 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-4 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 81 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 11 | 85 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEEQQQDDEF MMYRFKVERC YETSSHYFSE CSFVHPGENL KRRDPKQYNY SYLLCHAFQK 60 SGSCWKGDAC EYAHGAFESG LHPSRYRTMY CRNGTECRRE VCFFAHNHEE LRPLNATTSS 120 ALPPPTFYSN SPSASAMVPF TLSSPYALIQ SSSMPPWTPS AISYPAGRTM WPTPTQIRTT 180 VPTPQMPSNS LNARDNTHLD MKFFEYHNMP NLMMEGSSRL AGVNPTNLEG YFGSSIQSPT 240 AMQGYQNVNQ QLQRYPSQLT NSNVVRSQQF RFYPILNSRY DALSKQSQNF IESSSMASFN 300 SMLPDATSVT LEPSTSFSGL RSRDRKLELG DTSNTSTMAA ASNVDEPDVG WVDELVD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g464270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460262.1 | 0.0 | zinc finger CCCH domain-containing protein 47 | ||||
TrEMBL | A0A072UYW3 | 0.0 | A0A072UYW3_MEDTR; Putative transcription factor C3H family | ||||
STRING | XP_004500271.1 | 7e-93 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55980.1 | 2e-56 | salt-inducible zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g464270.1 |
Entrez Gene | 25490901 |
Publications ? help Back to Top | |||
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