PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g464260.1
Common NameMTR_3g464260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 530aa    MW: 58859.5 Da    PI: 6.146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g464260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07226246526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  Medtr3g464260.1 226 PCPEFRK-GSCRKGDACEYAHG 246
                      8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-621133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.8E-628132IPR020683Ankyrin repeat-containing domain
SMARTSM003565.5E-4221247IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5226246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338226248IPR000571Zinc finger, CCCH-type
SMARTSM0035692256279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MCVLNCLHLL LKIVDVNVNN HRRVYKTVTA KDDVLAFTDA VEKGEHEVDE VGLWYGRRVG  60
SKDMGYEERT ALMVAALFGS KGVLSYILGT SRVDVNRVCG SDRATALRCA VSGCSAASAE  120
VINLSLDASA DCSDLIVSVS SSIFGSRKRI LRSILEGVDD VDFLKEVGFQ LVEQQQNVAT  180
PRTEKKDYPI NPSLPDINNE IYSTDEFRMG NARRRDSRKY HYTCVPCPEF RKGSCRKGDA  240
CEYAHGIFEC WLHPAQYITR LCKDETRCTR RVCFFAHKPE ELRPLYASTG CPLPSPTSYS  300
NSPCASSMDS FTLSSPSSSI QSAPTPPLIP SASSPATGTM WQTQIQLHAA VPTLQMPRNR  360
LKTVLNAGNN IEFLELENRL SLSSPSNRLA RVNPTNLENF FGVDAFSKQS QSFIERTSMA  420
SFSSDLPSAT SVAMEPSIFS GWGSPDGKLD WSIRGFRNRS STSTMAYALN VDDPDVFLRH  480
ESWVNSLVKD APTMEFDQYC FEDQLKCHNP DAVLSLLEQL YMEHEQMVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g464260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590850.20.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ41e-119C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A072UXJ50.0A0A072UXJ5_MEDTR; CCCH-type zinc finger protein, putative
STRINGAES611010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-110C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]