PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g464260.1 | ||||||||
Common Name | MTR_3g464260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 530aa MW: 58859.5 Da PI: 6.146 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 226 | 246 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Medtr3g464260.1 226 PCPEFRK-GSCRKGDACEYAHG 246 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.33E-6 | 21 | 133 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.8E-6 | 28 | 132 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00356 | 5.5E-4 | 221 | 247 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-5 | 226 | 246 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 226 | 248 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 92 | 256 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MCVLNCLHLL LKIVDVNVNN HRRVYKTVTA KDDVLAFTDA VEKGEHEVDE VGLWYGRRVG 60 SKDMGYEERT ALMVAALFGS KGVLSYILGT SRVDVNRVCG SDRATALRCA VSGCSAASAE 120 VINLSLDASA DCSDLIVSVS SSIFGSRKRI LRSILEGVDD VDFLKEVGFQ LVEQQQNVAT 180 PRTEKKDYPI NPSLPDINNE IYSTDEFRMG NARRRDSRKY HYTCVPCPEF RKGSCRKGDA 240 CEYAHGIFEC WLHPAQYITR LCKDETRCTR RVCFFAHKPE ELRPLYASTG CPLPSPTSYS 300 NSPCASSMDS FTLSSPSSSI QSAPTPPLIP SASSPATGTM WQTQIQLHAA VPTLQMPRNR 360 LKTVLNAGNN IEFLELENRL SLSSPSNRLA RVNPTNLENF FGVDAFSKQS QSFIERTSMA 420 SFSSDLPSAT SVAMEPSIFS GWGSPDGKLD WSIRGFRNRS STSTMAYALN VDDPDVFLRH 480 ESWVNSLVKD APTMEFDQYC FEDQLKCHNP DAVLSLLEQL YMEHEQMVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g464260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590850.2 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 1e-119 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A072UXJ5 | 0.0 | A0A072UXJ5_MEDTR; CCCH-type zinc finger protein, putative | ||||
STRING | AES61101 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-110 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g464260.1 |
Entrez Gene | 25490900 |
Publications ? help Back to Top | |||
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