PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g463400.1
Common NameMTR_3g463400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 452aa    MW: 50930 Da    PI: 9.1466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g463400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17133179148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Medtr3g463400.1 133 KGQWTDEEDRKLLKLVKQYGVRKWSQIAEKLE-GRAGKQCRERWHNHL 179
                      799*****************************.*************97 PP
2Myb_DNA-binding461.2e-14185227145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  l++ + + G++ W+ Ia++++ gRt++ +k++w+
  Medtr3g463400.1 185 KDSWSEEEERMLIETHGMIGNR-WAEIAKRIP-GRTENAIKNHWN 227
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.929128183IPR017930Myb domain
SuperFamilySSF466891.8E-30130226IPR009057Homeodomain-like
SMARTSM007175.1E-17132181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-28134187IPR009057Homeodomain-like
CDDcd001675.30E-16136179No hitNo description
PfamPF139212.9E-21136196No hitNo description
SMARTSM007172.5E-14184232IPR001005SANT/Myb domain
PROSITE profilePS5129419.149184234IPR017930Myb domain
CDDcd001671.92E-11187230No hitNo description
Gene3DG3DSA:1.10.10.607.8E-20188232IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKPIGVRIGG GDNLKITNHS SIGPPLTAID RFLWGQHNHF PQKKLQQNVD GQNICSFGYS  60
NGSTYSFMWP NNNIMSQEAS FVDHLLANEE VMNWTQQIPS LCVEKEDAIN GLGKGAKMVG  120
RRPKKVSSFS LIKGQWTDEE DRKLLKLVKQ YGVRKWSQIA EKLEGRAGKQ CRERWHNHLR  180
PDIKKDSWSE EEERMLIETH GMIGNRWAEI AKRIPGRTEN AIKNHWNATK RRQNSRRKNK  240
RPQTTDGKPQ SSILQDYIKT LTTQKAFIST TAAAAAAATT TTATSSVSAI SEDPSSNQSS  300
FVFSNLSHEN SSSPLISESY DDELLFMQQL FKVNNNAEPV NPYSKKPSSN SYPLDYSSQT  360
NSNQILPDVT DCGFVHSNPS NYPKPNSQNN MYLSTSSTPM MNYLNSDHYL PPMLNGIQNQ  420
NNVELHLGNM NFSEGKREMD LLELVSSAQF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-451312335107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229240KRRQNSRRKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g463400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460199.10.0transcription factor MYB64
TrEMBLA0A072V7R50.0A0A072V7R5_MEDTR; Myb transcription factor
STRINGXP_004500264.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-67myb domain protein 64
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]