PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g435590.1
Common NameMTR_3g435590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 470aa    MW: 51517.1 Da    PI: 6.3149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g435590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05283303526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C +f     Ck+Gd C +aHg
  Medtr3g435590.1 283 PCADFKT-RDCKRGDMCEYAHG 303
                      6777777.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.84E-1825184IPR020683Ankyrin repeat-containing domain
CDDcd002043.75E-1352152No hitNo description
Gene3DG3DSA:1.25.40.205.9E-1752153IPR020683Ankyrin repeat-containing domain
PfamPF127966.9E-1169141IPR020683Ankyrin repeat-containing domain
SMARTSM002480.374104IPR002110Ankyrin repeat
PROSITE profilePS5029714.6974150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0011109141IPR002110Ankyrin repeat
PROSITE profilePS5008811.381109144IPR002110Ankyrin repeat
SMARTSM003560.0046278304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.066278305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4283305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4310341IPR000571Zinc finger, CCCH-type
SMARTSM0035611313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MCGGPEKSKS LSDNVEDMKN LTVTTNDSLS SLLEHASKND FEQFKIALDS DASLLLEVGA  60
WCVRQNGHNQ IVLEDRTALM VAASCGSIDI LKLILSCSEA GVNFTCGTDK TTALHCAASS  120
GTVNAVDAVK LLLSAGADIY CVDANGNRPM DVIVLPIVVP HKLEVVKRSL EQLLSNSAAD  180
ESVDDGSLPL SSFEKGSPSS PVAPKLTDTA VSSTPEKKKY PIDPSIPDIR NSIYATDEFR  240
MYSVKVLLCH RAYTHNWTEC PFYHPNENAR RRDPRKFTYS CVPCADFKTR DCKRGDMCEY  300
AHGVFETWLH PDQYRTRLCK EGTNCNRKVC FFAHVAEELR PSHASIRSAA SAPIVMDMAA  360
STSLYRGSLS AISSMYPPPF AQPLSPYANG LFDGQQHMLN DLSCFSQPCP GTISLGRSVN  420
SWSKWGSRTG KPDWSVNGND FGRSLRYTTF EHGNNVEEPD ISWVQSLVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g435590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459292.20.0zinc finger CCCH domain-containing protein 24
SwissprotP937551e-131C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A072UW950.0A0A072UW95_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGXP_004499884.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-134CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]