PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g435550.1

Common Name

MTR_3g435550

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Nin-like

Protein Properties

Length: 193aa MW: 22483.8 Da PI: 9.6279

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g435550.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.5	8.6e-26	58	106	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ e++s+yF++pi +AA+eL+v+lT LK++CR +GI+RWPhRk+ sl Medtr3g435550.1 58 MLTKETISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSL 106 6899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	42	127	IPR003035	RWP-RK domain
Pfam	PF02042	8.9E-22	59	106	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTDYGYGDAK NVVPMWNELD AGFYSDKHIF SISNIIGENV AKEIVKGKRC REENSARMLT 60 KETISEYFYM PISQAARELN VGLTHLKKRC RDLGIQRWPH RKLMSLQTLI KNVQEQGNEY 120 DEKIRNAVEV LQKEMKKVEE KPDLQLAENT KRLRQACFKA NYKKRRLMVM RLMDQSSISE 180 SSNVDDNHKM GY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g435550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013459288.2	1e-140	protein RKD2
Swissprot	Q9M9U9	2e-50	RKD1_ARATH; Protein RKD1
TrEMBL	A0A072UU07	1e-142	A0A072UU07_MEDTR; Putative transcription factor Nin-like family
STRING	XP_004514420.1	4e-90	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-53	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Medtr3g435550.1
Entrez Gene	25490410

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]