PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g408380.1
Common NameMTR_3g408380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 270aa    MW: 30721.3 Da    PI: 7.1845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g408380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013728223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C +C++sFs+   L  H+++H
  Medtr3g408380.1  7 VCLICNRSFSNGKALGGHMKSH 28
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.34628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097633IPR007087Zinc finger, C2H2
SuperFamilySSF576678.33E-6728No hitNo description
PfamPF139125.0E-8730IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576678.33E-6186213No hitNo description
PfamPF139121.4E-7190214IPR007087Zinc finger, C2H2
SMARTSM003550.15191213IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349191218IPR007087Zinc finger, C2H2
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SMARTSM003552.6238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517238260IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MENNGRVCLI CNRSFSNGKA LGGHMKSHYA KLPIHPKLPI HPKPPINNQV LEYSADLAKH  60
PTHSISTSSP SIVSPRNNST YNPQALKVKF KCTPSNFGRN SVFQSCPTNP TGKRSKRKPR  120
QFHMAEEREE NTQFNMAEEK EDNTQLQSVY SDLDIEAAET LGVILKKEWN QIEDKYYTEK  180
KKASENGNTV FECDICHEVF QSGKDLFGHE EIHRKTTNLA GEIGRSGNIY DVVNEKVHKC  240
EYCFDIFESG HVLEEHTKVH LYNYYDSDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119RSKRKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g408380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4678120.0CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459206.10.0zinc finger protein ZAT1
TrEMBLA0A072V3Z90.0A0A072V3Z9_MEDTR; C2H2 and C2HC zinc finger protein
STRINGAES684421e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-07C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]