PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g115400.2

Common Name

MTR_3g115400

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Nin-like

Protein Properties

Length: 910aa MW: 101558 Da PI: 5.5839

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g115400.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Medtr3g115400.2 590 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 641 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-25	593	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.1E-23	809	900	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-21	812	895	No hit	No description
SMART	SM00666	4.3E-22	815	898	IPR000270	PB1 domain
PROSITE profile	PS51745	24.519	815	898	IPR000270	PB1 domain
Pfam	PF00564	3.4E-16	816	897	IPR000270	PB1 domain
CDD	cd06407	6.90E-39	816	897	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MGDGAAVTSS ATNTMMEAPP QDENLMDFDY MSELLLDGCW LEASADGSEF LLQSSPFSNP 60 IFDPSFSWPV LENNEQPGND VRHESQDVPL GTEQESRIIV NNAGSSDLQQ CEFKTHLGEG 120 VSRLWIPPTP NPGPGGSSIT EKLIRALKWI KDFNRNKDML IQIWVPVNRG DDRPILRAND 180 LPFSLESRSL NLAKYREISV RYQFSAEVED SKELVAGLPG RVYRDKIPEW TPDVRFFRSD 240 EYPRVDHAQE CDVHGTLAVP VFEQGSRTCL GVIEVVMTTQ QSNYGRELET VCKALEVVDL 300 SSSGHSSPQN VKACVKSYET ALPEIQEVLR SACEMHKLPL AQTWVSCIQQ GKDGCRHSDD 360 NYTHCISPVE YACYVGDSSV RFFHEACMEH HLLIGQGVAG GAFMTNQPCF STDITSLSKT 420 DYPLSHHARL FGLRAAVAIR LRSIYSISDD YVLEFFLPVD CNDGEEQKKM LTSLSMIIQR 480 VCRSLRVITD KELEKNNLSS NEVMAVADIG FATDAVQSGL QHKRMAVSLD GEEKFNETMS 540 SKFSEQRRQQ ESLTLRGDAD CGRECSPSVE GNFLSSLGVN RTGEKRRAKA EKTITLQVLR 600 QYFAGSLKDA AKNIGVCTTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQL VIDSVQGASG 660 SFQIDSFYSK FSDLSSPNLS GSTLISTLNQ VDNPVSLSIQ PDPDSLSPEG ASKSPSSSCS 720 QSSYSSHSCS SLSEQQHHTN NVAAGNKDSL VGEDSVDVVL KRIRSEAELK SLIPDNKSKL 780 MPRSQSQETL GEHPKTEYRK SLLKTTRKAS QKEDAHRVKV TFGDEKTRFR LPKIWCYEDL 840 VQEIARRFNV SEMSKFDIKY LDDDYEWVLL TCDADLEECI DVSQSSETST IKLCLQPSSN 900 FIRSSLEFR*

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MGDGAAVTSS ATNTMMEAPP QDENLMDFDY MSELLLDGCW LEASADGSEF LLQSSPFSNP  60
IFDPSFSWPV LENNEQPGND VRHESQDVPL GTEQESRIIV NNAGSSDLQQ CEFKTHLGEG  120
VSRLWIPPTP NPGPGGSSIT EKLIRALKWI KDFNRNKDML IQIWVPVNRG DDRPILRAND  180
LPFSLESRSL NLAKYREISV RYQFSAEVED SKELVAGLPG RVYRDKIPEW TPDVRFFRSD  240
EYPRVDHAQE CDVHGTLAVP VFEQGSRTCL GVIEVVMTTQ QSNYGRELET VCKALEVVDL  300
SSSGHSSPQN VKACVKSYET ALPEIQEVLR SACEMHKLPL AQTWVSCIQQ GKDGCRHSDD  360
NYTHCISPVE YACYVGDSSV RFFHEACMEH HLLIGQGVAG GAFMTNQPCF STDITSLSKT  420
DYPLSHHARL FGLRAAVAIR LRSIYSISDD YVLEFFLPVD CNDGEEQKKM LTSLSMIIQR  480
VCRSLRVITD KELEKNNLSS NEVMAVADIG FATDAVQSGL QHKRMAVSLD GEEKFNETMS  540
SKFSEQRRQQ ESLTLRGDAD CGRECSPSVE GNFLSSLGVN RTGEKRRAKA EKTITLQVLR  600
QYFAGSLKDA AKNIGVCTTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQL VIDSVQGASG  660
SFQIDSFYSK FSDLSSPNLS GSTLISTLNQ VDNPVSLSIQ PDPDSLSPEG ASKSPSSSCS  720
QSSYSSHSCS SLSEQQHHTN NVAAGNKDSL VGEDSVDVVL KRIRSEAELK SLIPDNKSKL  780
MPRSQSQETL GEHPKTEYRK SLLKTTRKAS QKEDAHRVKV TFGDEKTRFR LPKIWCYEDL  840
VQEIARRFNV SEMSKFDIKY LDDDYEWVLL TCDADLEECI DVSQSSETST IKLCLQPSSN  900
FIRSSLEFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.25124	0.0	glandular trichome\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g115400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462281.1	0.0	protein NLP4 isoform X1
Refseq	XP_024636014.1	0.0	protein NLP4 isoform X1
Refseq	XP_024636015.1	0.0	protein NLP4 isoform X1
TrEMBL	A0A072V3U8	0.0	A0A072V3U8_MEDTR; Plant regulator RWP-RK family protein
STRING	XP_004500873.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Medtr3g115400.2
Entrez Gene	25490310

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]