PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g112510.1
Common NameMTR_3g112510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 295aa    MW: 32711.7 Da    PI: 8.3563
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g112510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702202.89.7e-63802272152
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                      rsg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqq+l+a+  ++    + ++ kr+ e  ++ +++l   +     
  Medtr3g112510.1  80 RSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLSALPFRRRD--HVDNYKRHTEI-NQGATSLPFPQ--PPI 168
                      6899***************************************************998666544..55666666654.33444444444..344 PP

           DUF702  96 skkeletsslPeevsseav.frcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152
                      +++ le  ++P+evss+ v frcvrvss+d  ++e++aYqtav+igGhvfkGiLydqG+
  Medtr3g112510.1 169 PTTGLELGQFPPEVSSPGVtFRCVRVSSLDGpDHEQCAYQTAVNIGGHVFKGILYDQGP 227
                      556799999*******9866**********967778**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.7E-5883227IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.5E-2785127IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.4E-22177227IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAGLFCLGRK EGQKEDKLDY YSNKELLLRN EEIYNNKGLE IWPQQSLNIY NAFGVGHSSS  60
SSSRNSSFDE CERRFGIMRR SGGMNCQDCG NQAKKDCIHL RCRTCCKSRG FQCQTHVKST  120
WVPAAKRRER QQHLSALPFR RRDHVDNYKR HTEINQGATS LPFPQPPIPT TGLELGQFPP  180
EVSSPGVTFR CVRVSSLDGP DHEQCAYQTA VNIGGHVFKG ILYDQGPPNL YTSIAPIEGS  240
SGGGHHQPQQ LDFMAATATT ATTSGIHFDP SLYSAPLNAF MAAGTQFFQP QHPN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g112510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0163374e-45DQ016337.1 Cicer reticulatum clone Crt93 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462189.10.0protein SHI RELATED SEQUENCE 7
SwissprotQ9FXH74e-69SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLA0A072V2G00.0A0A072V2G0_MEDTR; Putative transcription factor STY-LRP1 family
STRINGGLYMA04G03000.17e-94(Glycine max)
STRINGGLYMA06G03030.16e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.22e-64SHI-related sequence 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]