PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g112440.1 | ||||||||
Common Name | MTR_3g112440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25452.4 Da PI: 5.3634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.6e-19 | 37 | 87 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +g+WvAeIr+p + r r +lg+f t eAa a++aa++kl+g Medtr3g112440.1 37 CPYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFETSLEAALAYDAAALKLYG 87 68*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.26 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-35 | 38 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 38 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.3E-14 | 38 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-17 | 39 | 96 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 39 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKSGMEVEER KKLKKPQQAI SRKGCMKGKG GPENPSCPYK GVRQRTWGKW VAEIREPNRG 60 SRLWLGTFET SLEAALAYDA AALKLYGSRA KLNLPEISTS VKSEGQQSSP DTQIVQMEDP 120 YHPQGNHNTG NNTCLGFNTN PYPTVSMAYQ PLNNNNNNST LSFPFDTNSN PIDQTYKDFF 180 PPLDDSIWPE DAMSIDFPIN YASSRMITEE NLADGSVWDS LQTPWCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 39 | 95 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | ERKKLKKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g112440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462180.2 | 1e-168 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A072VDG8 | 1e-170 | A0A072VDG8_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | GLYMA04G03070.2 | 1e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g112440.1 |
Entrez Gene | 25490240 |
Publications ? help Back to Top | |||
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