PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g112300.2 | ||||||||
Common Name | MTR_3g112300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 518aa MW: 58597.5 Da PI: 6.1586 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.1 | 8e-10 | 365 | 402 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+ +e+ LA+++gLt +qV +WF N R + Medtr3g112300.2 365 FEHflNPYPKDSEKIMLARQTGLTRNQVANWFINARVR 402 665569******************************88 PP | |||||||
2 | BELL | 113.2 | 1.4e-36 | 236 | 307 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+l kk+kLls+l+eVdkrY+qy++ +q+v+ss ++vag g+a+pYt+lAl++iSr+FrcL+dai++q+ Medtr3g112300.2 236 ERQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQV 307 6899999**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.3E-51 | 157 | 305 | IPR006563 | POX domain |
Pfam | PF07526 | 4.7E-44 | 164 | 304 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.779 | 343 | 406 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-9 | 346 | 410 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.46E-12 | 346 | 407 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-17 | 347 | 413 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 349 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 363 | 402 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MYPNQAFSSG SYMDMFTSSP LLPYNYYNES VAEQNGIKFN MPIGDTVTMQ SIDEHSNAYN 60 SHVDEQSIQC QELSLRLGTL LPSNVSVPPF QYQYNDTGFV SLMNACRLPK GTTIANEDEL 120 KSSECMESIS SRGFHDTIKR DCFRNPHSSD QCLPGSQGFS NIFLNTQYLK AIQELLDEIV 180 NVRKQRGMEK QETIRNIGLD NPKDSDGKSI SQSMQITSGG PNDPNSNPSC EISSAERQNL 240 LDKKTKLLSM LDEVDKRYRQ YCHRMQIVVS SLDMVAGGGA AEPYTTLALR TISRQFRCLR 300 DAISNQVQVI QRNLGEQEGI PRLRYVDQQL RQQKALQHLG VMRQAWRPQR GLPENSVSIL 360 RAWLFEHFLN PYPKDSEKIM LARQTGLTRN QVANWFINAR VRLWKPMVEE IYKEEFGGSE 420 MNCNFSSGNT LQELGNFTTV ESGGHNNVSL ALELRNCESD GLATSDDDAI HKRHNNNNNQ 480 TLVSSSQSTD LLDYHFTDSG KQQHMFGNTH LLHEFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 352 | 410 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 352 | 410 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 8e-15 | 352 | 409 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-15 | 352 | 409 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7948 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g112300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141000 | 0.0 | BT141000.1 Medicago truncatula clone JCVI-FLMt-22M15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635627.1 | 0.0 | BEL1-like homeodomain protein 10 isoform X2 | ||||
TrEMBL | A0A072V3E8 | 0.0 | A0A072V3E8_MEDTR; BEL1-related homeotic protein | ||||
STRING | XP_004500978.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 1e-110 | BEL1-like homeodomain 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g112300.2 |
Entrez Gene | 25490228 |
Publications ? help Back to Top | |||
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