PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g112300.1
Common NameMTR_3g112300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 588aa    MW: 66330.9 Da    PI: 6.0666
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g112300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.4e-103654021954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   n+yp+ +e+  LA+++gLt +qV +WF N R +
  Medtr3g112300.1 365 FEHflNPYPKDSEKIMLARQTGLTRNQVANWFINARVR 402
                      665569******************************88 PP
2BELL112.91.7e-36236307172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq+l  kk+kLls+l+eVdkrY+qy++ +q+v+ss ++vag g+a+pYt+lAl++iSr+FrcL+dai++q+
  Medtr3g112300.1 236 ERQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQV 307
                      6899999**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-51157305IPR006563POX domain
PfamPF075266.0E-44164304IPR006563POX domain
PROSITE profilePS5007112.779343406IPR001356Homeobox domain
SMARTSM003891.5E-9346410IPR001356Homeobox domain
CDDcd000863.68E-12346407No hitNo description
SuperFamilySSF466891.71E-17347413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27349411IPR009057Homeodomain-like
PfamPF059202.6E-17363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MYPNQAFSSG SYMDMFTSSP LLPYNYYNES VAEQNGIKFN MPIGDTVTMQ SIDEHSNAYN  60
SHVDEQSIQC QELSLRLGTL LPSNVSVPPF QYQYNDTGFV SLMNACRLPK GTTIANEDEL  120
KSSECMESIS SRGFHDTIKR DCFRNPHSSD QCLPGSQGFS NIFLNTQYLK AIQELLDEIV  180
NVRKQRGMEK QETIRNIGLD NPKDSDGKSI SQSMQITSGG PNDPNSNPSC EISSAERQNL  240
LDKKTKLLSM LDEVDKRYRQ YCHRMQIVVS SLDMVAGGGA AEPYTTLALR TISRQFRCLR  300
DAISNQVQVI QRNLGEQEGI PRLRYVDQQL RQQKALQHLG VMRQAWRPQR GLPENSVSIL  360
RAWLFEHFLN PYPKDSEKIM LARQTGLTRN QVANWFINAR VRLWKPMVEE IYKEEFGGSE  420
MNCNFSSGNT LQGNNKLEEE SQDNVQIIDS DHSVQKASST RKHVEKNVID CGNGKLHGNQ  480
RLSIKSGFYS QIDSDSATYD LTELGNFTTV ESGGHNNVSL ALELRNCESD GLATSDDDAI  540
HKRHNNNNNQ TLVSSSQSTD LLDYHFTDSG KQQHMFGNTH LLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-15352409158Homeobox protein Meis1
4xrs_B6e-15352409158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.79480.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g112300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1410001e-139BT141000.1 Medicago truncatula clone JCVI-FLMt-22M15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462165.10.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_024635625.10.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_024635626.10.0BEL1-like homeodomain protein 7 isoform X1
SwissprotQ9FWS91e-105BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A072VDF10.0A0A072VDF1_MEDTR; BEL1-related homeotic protein
STRINGXP_004500978.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-107BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]