PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g112290.1
Common NameMTR_3g112290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 444aa    MW: 49947.9 Da    PI: 6.3499
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g112290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093684051954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Medtr3g112290.1 368 FEHflHPYPNDSEKLILASQTGLTKNQVSNWFINARVR 405
                      664459******************************88 PP
2BELL111.64.4e-36230300272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      ++e+q k+akL+sll+eV+ rY++y++q++ v+ssFe++aglg+ak Yt+lAl+a+SrhF +L+dai++qi
  Medtr3g112290.1 230 KHEHQVKIAKLISLLDEVEGRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQI 300
                      79********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-33160298IPR006563POX domain
PfamPF075265.4E-41165297IPR006563POX domain
CDDcd000867.36E-11349410No hitNo description
SMARTSM003892.8E-9349413IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-27354415IPR009057Homeodomain-like
SuperFamilySSF466891.8E-17355417IPR009057Homeodomain-like
PfamPF059202.5E-16366405IPR008422Homeobox KN domain
PROSITE profilePS5007111.693368409IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMSNSMTHQN QFENQELLGG GYVSSSLRNN NAYHESLGTF SNNIGLAQGS EMSHTRHLMD  60
LLGAANENNH QTQQGLSLSL GSHMLVDEYR NRSLNQGLMI NPSYFMPGQD QTREPCNQPV  120
VENLTSDYFF SGGSGTFASG SNNNNSLLLN RSTSTSYGSE SFGSVIGNSR YLKPVQSLLE  180
DLVDVGGNVI DRMNEKYAEK LFHGSRTGAR TLSSELKAEL RIHGHLLADK HEHQVKIAKL  240
ISLLDEVEGR YEKYYHQMEE VVSSFEMIAG LGAAKCYTAL ALQAMSRHFC SLRDAIMSQI  300
NAEKRKLFQD VPKINSGLSQ LSLFERDNNR QTRMSLQQLG VIQNQRQVWR PIRGLPETSV  360
AILRAWLFEH FLHPYPNDSE KLILASQTGL TKNQVSNWFI NARVRLWKPM IEEMYKEEFG  420
DSSEDSNPPA NNFMSREDST VED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16355412158Homeobox protein Meis1
4xrs_B2e-16355412158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g112290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462164.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-107BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A072V2D20.0A0A072V2D2_MEDTR; BEL1-like homeodomain protein
STRINGXP_004500979.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-109BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]