PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g112170.1
Common NameMTR_3g112170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 455aa    MW: 50200.3 Da    PI: 7.1418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g112170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.5e-053423801255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Medtr3g112170.1 342 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 380
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.719330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-5340384No hitNo description
SuperFamilySSF474591.22E-10340393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8344387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MESTNLHHLQ DQPPPPPPVS SLSSTPSYTV GGTTTTHSWT PNITLNNAGN INSNNLQEAN  60
TRSRSSLTHK NNYMNHDLGY HHSHQWTSDV AAEESCLNSK QFNHNNNLDS EFSKNSTIKE  120
EISFANFPKF TEMLNYTAPN SSMECYRILD PSTTNSTEMK NNNIDEHKDM NALMLKTLFT  180
GGEFYNAENY PNFGDTSIPT PSRGNNNISS QIHPSIDISN LNHYSSSSAT TSLDMNMQSL  240
DLLTNSSTSF SANLQDHHHS RFTTHDHDNL SFHLHPMQHH HPTNMSSSTN SIHKPSLFSN  300
GAAETKRGCT LMESKVSQSQ TALKKSRSSS ESRPSCPPFK VRKEKLGDRI AALQQLVAPF  360
GKTDTASVLM EAIGYIKFLQ GQVETLSVPY MKSSQNQNNR VIQGGSAKGD TKGEPKQDLR  420
SRGLCLVPLS CMSYIAGDGS TEVWQQRPNF GGPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g112170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462151.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A072V3D50.0A0A072V3D5_MEDTR; BHLH transcription factor-like protein
STRINGXP_004500989.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-50bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]