PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g110205.1
Common NameMTR_3g110205
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 188aa    MW: 20932.7 Da    PI: 7.7272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g110205.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-194191155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Medtr3g110205.1 41 PVYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALSIKG 91
                     68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3242100IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2142100IPR016177DNA-binding domain
SMARTSM003804.7E-3642105IPR001471AP2/ERF domain
PROSITE profilePS5103223.3544299IPR001471AP2/ERF domain
CDDcd000181.12E-3243101No hitNo description
PRINTSPR003671.7E-104354IPR001471AP2/ERF domain
PRINTSPR003671.7E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNSTIEQPHN NSETKSSSNS PPPPSPQSQQ IKGIRDTSKH PVYRGVRMRN WGKWVSEIRE  60
PKKKSRIWLG TFPTPEMAAR AHDVAALSIK GSAAILNFPE LANLLPRPAS LAPRDVQAAA  120
NKAAHMEFPS STTSYELSEI IELPRLGNVG DFGKEFVFMD SIDTSWMFQP PCLHTMEDVI  180
WSEIYNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20381041077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.224440.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g110205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0518070.0BT051807.1 Medicago truncatula clone MTYF5_F6_F7_F81G-E-9 unknown mRNA.
GenBankBT1441570.0BT144157.1 Medicago truncatula clone JCVI-FLMt-16C4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462028.11e-138dehydration-responsive element-binding protein 3
SwissprotQ9LYD34e-64DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A072V3W81e-136A0A072V3W8_MEDTR; AP2 domain class transcription factor
TrEMBLB7FI901e-136B7FI90_MEDTR; Uncharacterized protein
STRINGXP_004501158.13e-94(Cicer arietinum)
STRINGXP_004517241.13e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]