PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g106400.3
Common NameMTR_3g106400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 424aa    MW: 48217.9 Da    PI: 6.2924
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g106400.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073203532154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Medtr3g106400.3 320 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 353
                      469*****************************87 PP
2ELK28.82.8e-10274295122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Medtr3g106400.3 274 ELKHELKQGYKEKIVDIREEIL 295
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-19104148IPR005540KNOX1
PfamPF037901.9E-17107147IPR005540KNOX1
SMARTSM012565.9E-27160215IPR005541KNOX2
PfamPF037917.5E-19166214IPR005541KNOX2
SMARTSM011886.1E-4274295IPR005539ELK domain
PROSITE profilePS512139.969274294IPR005539ELK domain
PfamPF037899.8E-7274295IPR005539ELK domain
PROSITE profilePS5007111.742294357IPR001356Homeobox domain
SMARTSM003896.5E-11296361IPR001356Homeobox domain
SuperFamilySSF466899.84E-16296361IPR009057Homeodomain-like
CDDcd000864.05E-11297358No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25301358IPR009057Homeodomain-like
PfamPF059201.2E-17314353IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAYHNQDNPL HHFTEQQQPT SDPHHSFQTA PNWLNNALLR NLDTNVNATA TNNNNGSQSS  60
GQWLSRPILH RNHSEVIDDV TGAGMKAEES GEATAEGVMN WQKAKHKGEI MAHPLYEQLL  120
SAHVSCLRIA TPVDQLPRID AQLAESQNVV AKYSALGQQG MLDNDDNKQL DHFMSHYVLL  180
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSEDE DEQVDSDVNL  240
FDGGLDGSDN SMGGFGPLVL TENERSLMER VRHELKHELK QGYKEKIVDI REEILRKRRA  300
GKLPGDTTSV LKDWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS  360
TSNALKSKRK RYFYIKKIVL FIILNLHELC TDLELEISNA GDKSTKLENQ NLISWWQQIQ  420
QSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350370RKRNWHSNPSTSNALKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118250.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g106400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280600.0EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634929.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A072V1N70.0A0A072V1N7_MEDTR; Class II knotted-like homeobox protein
STRINGAES735810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-170KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]