PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g106400.2 | ||||||||
Common Name | MTR_3g106400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 374aa MW: 42267 Da PI: 6.4194 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.4e-08 | 320 | 353 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Medtr3g106400.2 320 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 353 469*****************************87 PP | |||||||
2 | ELK | 29 | 2.4e-10 | 274 | 295 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Medtr3g106400.2 274 ELKHELKQGYKEKIVDIREEIL 295 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.5E-19 | 104 | 148 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-17 | 107 | 147 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.9E-27 | 160 | 215 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.3E-19 | 166 | 214 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 274 | 295 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 274 | 294 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.4E-7 | 274 | 295 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 294 | 357 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-16 | 296 | 360 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.5E-11 | 296 | 361 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-11 | 297 | 358 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-25 | 301 | 358 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 314 | 353 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAYHNQDNPL HHFTEQQQPT SDPHHSFQTA PNWLNNALLR NLDTNVNATA TNNNNGSQSS 60 GQWLSRPILH RNHSEVIDDV TGAGMKAEES GEATAEGVMN WQKAKHKGEI MAHPLYEQLL 120 SAHVSCLRIA TPVDQLPRID AQLAESQNVV AKYSALGQQG MLDNDDNKQL DHFMSHYVLL 180 LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSEDE DEQVDSDVNL 240 FDGGLDGSDN SMGGFGPLVL TENERSLMER VRHELKHELK QGYKEKIVDI REEILRKRRA 300 GKLPGDTTSV LKDWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS 360 TSNALKSKRK RNK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 370 | RKRNWHSNPSTSNALKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11825 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g106400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF128060 | 0.0 | EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603330.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | G7JAE2 | 0.0 | G7JAE2_MEDTR; Class II knotted-like homeobox protein | ||||
STRING | AES73581 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-171 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g106400.2 |
Entrez Gene | 11426748 |
Publications ? help Back to Top | |||
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