PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g106290.1 | ||||||||
Common Name | MTR_3g106290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21798.6 Da PI: 8.8234 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 7 | 54 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + Medtr3g106290.1 7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54 69******9.**********8.....556*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.11E-35 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 21.14 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-41 | 7 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-11 | 7 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR 60 TNFPYNPNVS QSSSSKLLSA TLTAKLHRCY MASLQITRPI SLQQPQKQSS QSVNISTNNA 120 PMKSSQEIDT TMKHEEEKES EGNWVFKKVK VENSQQFIKP LEEDHIEQMI EELLHYGSIE 180 LCSVFPTQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 8 | 71 | 6 | 70 | ATERF1 |
3gcc_A | 2e-18 | 8 | 71 | 6 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g106290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141954 | 0.0 | BT141954.1 Medicago truncatula clone JCVI-FLMt-6M2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603319.2 | 1e-141 | protein PPLZ02 | ||||
Swissprot | Q94AW5 | 2e-83 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A396IYJ4 | 1e-139 | A0A396IYJ4_MEDTR; Putative transcription factor AP2-EREBP family | ||||
TrEMBL | G7J9X0 | 1e-140 | G7J9X0_MEDTR; Ethylene response factor | ||||
STRING | AES73570 | 1e-140 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1106 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g106290.1 |
Entrez Gene | 11427311 |
Publications ? help Back to Top | |||
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