PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g106290.1
Common NameMTR_3g106290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 190aa    MW: 21798.6 Da    PI: 8.8234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g106290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18754253
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Medtr3g106290.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                     69******9.**********8.....556*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.11E-35666No hitNo description
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
SMARTSM003806.5E-41770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-34764IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-21766IPR016177DNA-binding domain
PfamPF008471.1E-11755IPR001471AP2/ERF domain
PRINTSPR003673.1E-11819IPR001471AP2/ERF domain
PRINTSPR003673.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNVS QSSSSKLLSA TLTAKLHRCY MASLQITRPI SLQQPQKQSS QSVNISTNNA  120
PMKSSQEIDT TMKHEEEKES EGNWVFKKVK VENSQQFIKP LEEDHIEQMI EELLHYGSIE  180
LCSVFPTQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18871670ATERF1
3gcc_A2e-18871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g106290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419540.0BT141954.1 Medicago truncatula clone JCVI-FLMt-6M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603319.21e-141protein PPLZ02
SwissprotQ94AW52e-83ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A396IYJ41e-139A0A396IYJ4_MEDTR; Putative transcription factor AP2-EREBP family
TrEMBLG7J9X01e-140G7J9X0_MEDTR; Ethylene response factor
STRINGAES735701e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-59ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]