PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g105510.1
Common NameMTR_3g105510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 245aa    MW: 27407 Da    PI: 5.5045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g105510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-183585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka +aa  +l+g
  Medtr3g105510.1 35 KKYKGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDAALYCLRG 85
                     59******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-263592No hitNo description
PfamPF008471.8E-103685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-273694IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-193693IPR016177DNA-binding domain
SMARTSM003804.7E-283699IPR001471AP2/ERF domain
PROSITE profilePS5103220.5743693IPR001471AP2/ERF domain
PRINTSPR003671.0E-83748IPR001471AP2/ERF domain
PRINTSPR003671.0E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDHHHHHVTT GQVKTPPSSS SSSTSSGNND NKTEKKYKGV RLRKWGKWVS EIRLPNSRER  60
IWLGSYDSAE KAAKAFDAAL YCLRGRHANF NFLDTPLNLD INAVSNNSLT PQQIREVAAN  120
FANKNPPIID NNNNGNNSNV QSNMVTEIGG SSSTTTMYNN GSTIDWTFLN MLDGSNTHDA  180
NFVGSDYGLL YSDLDKMMHS GELMYSIPPP PLFEDYQNLS SVEEYDDDNG DPFSHQSFLW  240
NWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1436921471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g105510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120560.0CU012056.10 M.truncatula DNA sequence from clone MTH2-157G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603247.20.0ethylene-responsive transcription factor ERF017
TrEMBLA0A396J1F90.0A0A396J1F9_MEDTR; Putative transcription factor AP2-EREBP family
TrEMBLG7J9570.0G7J957_MEDTR; Ethylene-responsive transcription factor ERF018
STRINGAES734980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-29ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]