PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g105480.1
Common NameMTR_3g105480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 231aa    MW: 25881.2 Da    PI: 4.5792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g105480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-182979155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka +aa  +l+g
  Medtr3g105480.1 29 KKYKGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDAALYCLRG 79
                     59******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5743087IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-193087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-273088IPR001471AP2/ERF domain
SMARTSM003804.7E-283093IPR001471AP2/ERF domain
PfamPF008471.6E-103079IPR001471AP2/ERF domain
PRINTSPR003679.6E-93142IPR001471AP2/ERF domain
CDDcd000182.24E-233386No hitNo description
PRINTSPR003679.6E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDNQITTDQI KTLSSSSSTS SGNNDNKNKK YKGVRLRKWG KWVSEIRLPN SRERIWLGSY  60
DSAEKAAKAF DAALYCLRGR HANFNFLDTP LNLDINAVSN NSLTPQQIRE VAANFANKNP  120
PIIDNNNNGN NSNVQSNMVT EIGGSSSTTT MYNNRSTIDW TFLNMLDGSN THDADFVGSE  180
NIGGFYSDLE KLYSGELMYS IAPPLIEEHD DDDDDNDPFS HQSFLWNWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1430861471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g105480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120560.0CU012056.10 M.truncatula DNA sequence from clone MTH2-157G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603244.21e-170ethylene-responsive transcription factor ERF017
SwissprotQ9S7L56e-39ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A396J1D71e-168A0A396J1D7_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAES734951e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]