PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g104830.1
Common NameMTR_3g104830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 499aa    MW: 56342.7 Da    PI: 4.936
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g104830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.41.1e-21392444252
           RWP-RK   2 ekeisledlskyFslpikdAA..keLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      +++++l+dl  yF+lpi +AA   ++++c+TvLK++CR+ G++RWPhRk+ksl
  Medtr3g104830.1 392 SAKLKLSDLCDYFHLPIDEAAdhEKVKLCPTVLKKTCRKAGLPRWPHRKVKSL 444
                      5789*****************4447889***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.949377464IPR003035RWP-RK domain
PfamPF020422.6E-17395444IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MNPSMEDEDL MFDCFENSLD PSFFNMSNPT LADLSIDNNN NNVGPTSLSQ QTQHINLSIN  60
KNNGPHQNLQ GVGIVSNFND VFSSPPSQEN YYGHGGNSNN GNDPFNSNVL PQQNHSGNND  120
PFAYNLESPE NDHHIQQVHG GCNDPYMYNL VPPENHHEYI QQGQGGNTDS FSDVMLQQHG  180
NGSTNETFSV PMVQDQYDQN SINFSFGRNS LEVGDSSSRI YENQQQSIPE IQIPILLNQT  240
ELRALNQWPP TVTPYFCSCC QVLREIIHTD GMQFEKLEIH GRLALITHAI HHQIPVNGAP  300
SVYQMIDFCG KSLGEIKIFL AQYCVERHLA GYILMQDPMS EFYETLCTGL DWFSDINMDG  360
LIQNNSDEVE QEQEQMGDNG TLRNLSEQRK KSAKLKLSDL CDYFHLPIDE AADHEKVKLC  420
PTVLKKTCRK AGLPRWPHRK VKSLLKQIKL LAKQWEGQDP EARARTEREI KSLQTEMIKH  480
CGGHIPTAFY NIAAYLPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g104830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673160.0CT967316.8 M.truncatula DNA sequence from clone MTH2-189G21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501440.11e-150hybrid signal transduction histidine kinase A
TrEMBLG7J8D20.0G7J8D2_MEDTR; RWP-RK domain protein
STRINGAES734390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74782846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.15e-12RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]