PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g104100.1
Common NameMTR_3g104100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 380aa    MW: 41877.1 Da    PI: 6.794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g104100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11198240754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++E++RR+++ + +++Lr+++Pk      +K++K++iL  Av+Y+++L
  Medtr3g104100.1 198 IAEKKRRQKLSDNMHKLRSVVPKI-----TKMDKISILGDAVNYLNEL 240
                      68*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-15188257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.602191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-11198244No hitNo description
PfamPF000101.1E-8198240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13198252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-6308358No hitNo description
PROSITE profilePS5167111.809310379IPR002912ACT domain
CDDcd048733.81E-8311376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLPGLKSQIE EECYMNNIPP FTEELIPNLQ NHTQQQNIVG PSDPNTSGFR HHLGSSFSLP  60
SPKSNFSNLP NINDNINITS TTITNNPFGN VFNLDSHDVF QPPLSVEQLT SIWLKEFENK  120
AEKDGNEEVG GGSNHDSNES VGVGKMGNHG KNEGNNYNAN NNVGGSNNNI IDNNDEENCV  180
INGNRKGKKK KTPSKSLIAE KKRRQKLSDN MHKLRSVVPK ITKMDKISIL GDAVNYLNEL  240
KEQINDLQSE IASSSPRSFM PPPTGTHIMT STMSALPVQM KEKLCPNNVS GLKNQPTKVD  300
VRVREEGIVN IHMFCANKPG VLASIMKALD SLGLDVHQAN ISCFNDFSLD VFKAEQHSKD  360
QELTPVQIKA LLLKALDFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190NRKGKKKK
2188203KKKTPSKSLIAEKKRR
3200205KKRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g104100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094900.0CT009490.7 M.truncatula DNA sequence from clone MTH2-174P8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603119.30.0transcription factor ICE1
TrEMBLG7J7J90.0G7J7J9_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES694961e-173(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-64bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]