PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g102570.1
Common NameMTR_061s1024, MTR_133s1025, MTR_3g102570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 319aa    MW: 36080.7 Da    PI: 5.6232
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g102570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-25955147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     k+ien +nrqvtfskRrng++KKA+ELSvLCd++v +i+fs++g+  
  Medtr3g102570.1  9 KKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRAT 55
                     68*****************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.483161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-29282IPR002100Transcription factor, MADS-box
CDDcd002653.36E-36276No hitNo description
PRINTSPR004044.8E-24323IPR002100Transcription factor, MADS-box
PfamPF003199.0E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRVKLQIKK IENITNRQVT FSKRRNGLIK KAYELSVLCD VDVGLIMFSP SGRATLFSGN  60
RSIEEILERY INLPDSERGR MHNQEHIRKV LRKLKAETDQ ICQAPSPTIT DFQLKEVQRE  120
IFICKSQLEE MENRLRIFEG DPSEITTLCE AEYREQVLQE TLKQVQLRKV HLTKTVDVDG  180
FIAGTTENAL GWFSQGDTND QILNFANAYN PSPLSDHQSL STVVDMVTPT STLLNSANVD  240
HNCQISPRDA AEADISNTLS TQFGQVMDTS LSSWEHLHQL ERGPLAVAET REGHLFEQYF  300
SQFSPSNILI TNHGQLQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-15180179MEF2 CHIMERA
6byy_B4e-15180179MEF2 CHIMERA
6byy_C4e-15180179MEF2 CHIMERA
6byy_D4e-15180179MEF2 CHIMERA
6bz1_A5e-15180179MEF2 CHIMERA
6bz1_B5e-15180179MEF2 CHIMERA
6bz1_C5e-15180179MEF2 CHIMERA
6bz1_D5e-15180179MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g102570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501539.11e-179agamous-like MADS-box protein AGL104
TrEMBLG7ZXM50.0G7ZXM5_MEDTR; MADS-box transcription factor family protein
STRINGAES839630.0(Medicago truncatula)
STRINGAES856120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-53AGAMOUS-like 66
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]