PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g102100.1
Common NameMTR_3g102100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 173aa    MW: 19813.3 Da    PI: 9.0668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g102100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.7e-184493255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Medtr3g102100.1 44 PYRGIRKRK-WGKWVAEIREP---NKRSRIWLGSYITPVAAARAYDTAVFYLRG 93
                     69****999.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-2044102IPR016177DNA-binding domain
SMARTSM003801.2E-3644107IPR001471AP2/ERF domain
PROSITE profilePS5103222.22144101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2945102IPR001471AP2/ERF domain
PfamPF008472.3E-104593IPR001471AP2/ERF domain
CDDcd000181.35E-2745103No hitNo description
PRINTSPR003678.3E-124556IPR001471AP2/ERF domain
PRINTSPR003678.3E-1283103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVQQSESTRR IMEEERDCCS TIIRNIESNN KPQEKHNKQQ LEKPYRGIRK RKWGKWVAEI  60
REPNKRSRIW LGSYITPVAA ARAYDTAVFY LRGPTARLNF PELLLEDDEE NKDGSIQQGN  120
MSADLIRKKA TKVGARVDAL QAALQASSRS DSDQFNADVK PDLNKFPEPE DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1543101463ATERF1
3gcc_A5e-1543101463ATERF1
5wx9_A8e-15451021573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86700.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g102100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227280.0AC122728.32 Medicago truncatula clone mth2-22l4, complete sequence.
GenBankBT1475250.0BT147525.1 Medicago truncatula clone JCVI-FLMt-6F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603078.11e-126ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC309e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLG7J6Y51e-125G7J6Y5_MEDTR; Ethylene response factor
STRINGAES733291e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-44related to AP2 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]