PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g101870.1
Common NameMTR_3g101870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 374aa    MW: 42189.1 Da    PI: 7.9451
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g101870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36251172103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkkg+k+ll+
  Medtr3g101870.1  25 FLTKTYQLVDDPATDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKKGEKHLLC 109
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Medtr3g101870.1 110 EIHRRKTS 117
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.07E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.0E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MALLLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEYF KKGEKHLLCE IHRRKTSQPQ  120
QTGINMNHHQ QHHNVPPSFF PFSNTRVSIS PSNDYSDEQL NNWCDSPPLT SPSFVNGGTQ  180
TTATNNYNTS VTALSEDNER LRRSNNMLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNSYS  240
SSFLLPQASN STPMNGGGNV SMVQKPMNQL LGYYNSNPKH VSHLQTQNQT HHGMNVNSPT  300
NTSRSSITMV EGLNSNNCSK TKLFGVSLQS KKRVHPECGS NNPNSLETNK ARLVLEKEHD  360
FDLGLNLMPP STC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g101870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1796970.0CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603058.10.0heat stress transcription factor B-4 isoform X1
SwissprotQ9C6351e-123HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLG7J6F20.0G7J6F2_MEDTR; Heat shock transcription factor
STRINGAES733090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-125heat shock transcription factor B4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]