PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g101810.1
Common NameMTR_3g101810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 272aa    MW: 30398.1 Da    PI: 9.8996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g101810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08184226754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ r RR+ri +++  L++++P       +K++ a++L +A++Y+k L
  Medtr3g101810.1 184 IAARHRRERISEKIRILQRMVPGG-----TKMDTASMLDEAIHYVKFL 226
                      56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13178240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10179231No hitNo description
SuperFamilySSF474596.8E-14181237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6185226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDCNQLKSSS SSSEEQIDMM LMMMMQLPEF SSSNGNNNTI NQFPPSDQQF YGTSNASNNT  60
RPLADLIDNP PNQIPWSSSS SFTHLPSQST TNTNTIYFTN NNSTPLMFQQ QQTTPLMFSN  120
SSNEIAPNTN HYGTASPSEK RNSMAAMREM IFRIAAMQPI YIDPESVKPP KRRNVKISKD  180
PQSIAARHRR ERISEKIRIL QRMVPGGTKM DTASMLDEAI HYVKFLKTQL KSLQERASGA  240
NSNRTVAGSG LGFPVSLPKP NYQDRNVDRY G*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g101810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120430.0CU012043.5 M.truncatula DNA sequence from clone MTH2-63O12 on chromosome 3, complete sequence.
GenBankCU1796970.0CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603053.10.0transcription factor HEC2
SwissprotQ9SND41e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLG7J6E70.0G7J6E7_MEDTR; Putative transcription factor bHLH family
STRINGAES733040.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]