PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g100040.2 | ||||||||
Common Name | MTR_3g100040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 27991 Da PI: 5.2464 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.3 | 6.5e-16 | 98 | 134 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ + Tp +Rrgp g++tLCnaCGl+++ kg+ Medtr3g100040.2 98 CQHCGVNEnnTPAMRRGPAGPRTLCNACGLMWANKGT 134 *******999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 6.8E-17 | 27 | 67 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.285 | 27 | 69 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-9 | 92 | 145 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.592 | 92 | 151 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-12 | 92 | 145 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-14 | 96 | 139 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.59E-15 | 97 | 141 | No hit | No description |
Pfam | PF00320 | 1.1E-13 | 98 | 134 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 98 | 125 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MPTAELPFDQ NNRGMGGIGK LPNLSRRIAS LVRYREKRKE RCFDKKIRYT VRKEVAERMH 60 REKGQFAPLK QSPGSSSWNS AQGAGQDGSP NPESLRRCQH CGVNENNTPA MRRGPAGPRT 120 LCNACGLMWA NKGTLRDLSK GGRNISVEQS RPDPPVDVKP TVLEGEFSVI ENEQGISEEP 180 SKTVGAEVLN DHASNPGDEE LSESAEHLTK TLPLVIYHSS ENDDEQEPVV ELSNPSDAGM 240 SNPSDTDIDI PGNFD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17249 | 0.0 | glandular trichome| leaf| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g100040.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU075908 | 5e-69 | CU075908.9 M.truncatula DNA sequence from clone MTH2-31B23 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602887.2 | 0.0 | GATA transcription factor 19 | ||||
Swissprot | Q8GXL7 | 4e-45 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A072V126 | 0.0 | A0A072V126_MEDTR; GATA transcription factor | ||||
TrEMBL | G7J4K2 | 0.0 | G7J4K2_MEDTR; GATA transcription factor | ||||
STRING | AES73138 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-49 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g100040.2 |
Entrez Gene | 11432282 |
Publications ? help Back to Top | |||
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