PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g099620.1
Common NamebHLH1, MTR_3g099620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 322aa    MW: 36817.2 Da    PI: 6.1847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g099620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13114165155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Medtr3g099620.1 114 QRMTHITVERNRRKQMNEYLNVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 165
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-11112169No hitNo description
SuperFamilySSF474598.9E-16112177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13114177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALETVVFPQ QDPFTYSYKD NYFNSLNNDY DHLHAEEQEN VLLGIINNEQ QNLHANWDHQ  60
WEYSHSSSPE ICTVDQTITA PPSSTMEEAT VTASCRRKRR RIKSAKNKEE IENQRMTHIT  120
VERNRRKQMN EYLNVLRSLM PSSYVQRGDQ ASIIGGAINF VKELEQHLQS MGGQKKTKEP  180
NENIGLNNGP PFAEFFTFPQ YTTSATQNNN NNNNVTMEQH NYQEQKQWAV ADIEVTMVDS  240
HANMKILSKK KPGQLMKIVV GLQNLRLTIL HLNVTTVDDM VLYSVSIKVE EGSQLNSVDE  300
IAAAVNRLLR TVQQELAYQL N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRRR
297101KRRRI
3114125RMTHITVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.100030.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g099620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR6970550.0FR697055.1 Medicago truncatula mRNA for basic helix loop helix 1 (bHLH1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602850.10.0transcription factor bHLH94
SwissprotQ9C7T42e-87BH096_ARATH; Transcription factor bHLH96
TrEMBLF0V4370.0F0V437_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES731010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Godiard L, et al.
    MtbHLH1, a bHLH transcription factor involved in Medicago truncatula nodule vascular patterning and nodule to plant metabolic exchanges.
    New Phytol., 2011. 191(2): p. 391-404
    [PMID:21679315]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]