PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g095960.5
Common NameMTR_3g095960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 1025aa    MW: 115286 Da    PI: 8.0082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g095960.5genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07174196326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      t++Cr+fa  G C++G+ C+F H 
  Medtr3g095960.5 174 TRPCRDFAV-GKCRRGSHCNFLHH 196
                      89*******.*************6 PP
2zf-CCCH20.96.2e-07235256426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++CkF H+
  Medtr3g095960.5 235 EACINFAK-GSCRMGASCKFVHD 256
                      78******.*************7 PP
3zf-CCCH17.11e-05458479426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ffa  G C+ G  C+F+H+
  Medtr3g095960.5 458 APCKFFAS-GNCRNGKHCRFSHD 479
                      68**5555.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.699171198IPR000571Zinc finger, CCCH-type
SMARTSM003560.001173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6174198IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5174196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638231258IPR000571Zinc finger, CCCH-type
SMARTSM003560.001232257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4235256IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4235256IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4454480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6457479IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272459481IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MRIDFWFLLI YYFLLLIQST LHYSKRSSIV DMSGTGRKHS SKWDLSDEHK FSPGSKQMRS  60
GRSSADVAGS NSSEWAYLEG NDKLRPVTGF SSKESYYGGR GSNEDDAMHK DHRVFNSRRE  120
WDTDGSYSRN MRHSQSPKND WSRNSRSRSR SPPRGFRWDS GVDGRKRTRV GGSTRPCRDF  180
AVGKCRRGSH CNFLHHDNQN RENSWEGRPR EDGAPRYSAT HESVDHSLKR GRSNEACINF  240
AKGSCRMGAS CKFVHDYDSD GYGKVSMDEF TRERDDEALR YPATHESRDH SLKSGRSNEF  300
IREREDGARR YPATHESRDH SLKSGRSNEF TRERENGGPR YPATYESRDH SPKSGRSNEF  360
TSEREDGAPR YPTTHESRDY SLKSGRSNEF TSEREDGAPR YPTTHESRDY SLKSGRSNDE  420
YGKVFMDEFT REREVGRRHR DNSFEHGGRH VPNRTIDAPC KFFASGNCRN GKHCRFSHDT  480
QACRSPIRRL RDDRWTRNPS RDHQMLDRRK LSDSISPNKR LRDDRWGSDS DMADPDRVED  540
SPKRNDTVSG SDAAKLIENK NGNVGATEPE FTDLPITDGW GHGLDKSGLH AKPPILSDKK  600
EADIWIAENT GANMHGSQSI GTTDIWPGDA EMSPDWNYRM GSSSHMEEHK QKEHDVSQGG  660
TYLAISEHNG IQLAPGQNIN QNTDNVNPLH TSSYHAVGQS QVDVPILSSR EGIVDAIHSQ  720
EVSTEQKYTG EPNIMDSGLS QVSSINPPVQ NVVSNEQLAQ LTNLSASLAH ILGAGQQLPQ  780
LYAALNSHEL KDSPSQAKTQ VPAMPVSITC IKPDPAVELP KQYDPMNDSI EQKNADASGV  840
PPAIPPSKTI AEVEILSQLS TPGRENFGNS IKGASSEHVK SDNLIHLQPG QNTVVNKDNN  900
EEVARERKNS QDGHKSTKEN GPQNMDQNAG PDDAKQTKEM KGSRAFKFAL AEFVKELLKP  960
TWKEGKITKE DYKTIVKKVV DKVTGTIQEA NIPQTQEKID QYLSFSKPKL NKLVQAYVEK  1020
VQKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.215290.0flower| leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g095960.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095680.0CT009568.8 M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602587.20.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634891.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634892.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634893.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634894.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634895.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634896.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A072V1M00.0A0A072V1M0_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein, putative
STRINGAES728380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-12C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]