PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g095960.2 | ||||||||
Common Name | MTR_3g095960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 994aa MW: 111422 Da PI: 7.8875 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 143 | 165 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++Cr+fa G C++G+ C+F H Medtr3g095960.2 143 TRPCRDFAV-GKCRRGSHCNFLHH 165 89*******.*************6 PP | |||||||
2 | zf-CCCH | 21 | 6e-07 | 204 | 225 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H+ Medtr3g095960.2 204 EACINFAK-GSCRMGASCKFVHD 225 78******.*************7 PP | |||||||
3 | zf-CCCH | 17.1 | 9.7e-06 | 427 | 448 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ffa G C+ G C+F+H+ Medtr3g095960.2 427 APCKFFAS-GNCRNGKHCRFSHD 448 68**5555.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.699 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 143 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-6 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 201 | 226 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 204 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 204 | 225 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 423 | 449 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 426 | 448 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 428 | 450 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MSGTGRKHSS KWDLSDEHKF SPGSKQMRSG RSSADVAGSN SSEWAYLEGN DKLRPVTGFS 60 SKESYYGGRG SNEDDAMHKD HRVFNSRREW DTDGSYSRNM RHSQSPKNDW SRNSRSRSRS 120 PPRGFRWDSG VDGRKRTRVG GSTRPCRDFA VGKCRRGSHC NFLHHDNQNR ENSWEGRPRE 180 DGAPRYSATH ESVDHSLKRG RSNEACINFA KGSCRMGASC KFVHDYDSDG YGKVSMDEFT 240 RERDDEALRY PATHESRDHS LKSGRSNEFI REREDGARRY PATHESRDHS LKSGRSNEFT 300 RERENGGPRY PATYESRDHS PKSGRSNEFT SEREDGAPRY PTTHESRDYS LKSGRSNEFT 360 SEREDGAPRY PTTHESRDYS LKSGRSNDEY GKVFMDEFTR EREVGRRHRD NSFEHGGRHV 420 PNRTIDAPCK FFASGNCRNG KHCRFSHDTQ ACRSPIRRLR DDRWTRNPSR DHQMLDRRKL 480 SDSISPNKRL RDDRWGSDSD MADPDRVEDS PKRNDTVSGS DAAKLIENKN GNVGATEPEF 540 TDLPITDGWG HGLDKSGLHA KPPILSDKKE ADIWIAENTG ANMHGSQSIG TTDIWPGDAE 600 MSPDWNYRMG SSSHMEEHKQ KEHDVSQGGT YLAISEHNGI QLAPGQNINQ NTDNVNPLHT 660 SSYHAVGQSQ VDVPILSSRE GIVDAIHSQE VSTEQKYTGE PNIMDSGLSQ VSSINPPVQN 720 VVSNEQLAQL TNLSASLAHI LGAGQQLPQL YAALNSHELK DSPSQAKTQV PAMPVSITCI 780 KPDPAVELPK QYDPMNDSIE QKNADASGVP PAIPPSKTIA EVEILSQLST PGRENFGNSI 840 KGASSEHVKS DNLIHLQPGQ NTVVNKDNNE EVARERKNSQ DGHKSTKENG PQNMDQNAGP 900 DDAKQTKEMK GSRAFKFALA EFVKELLKPT WKEGKITKED YKTIVKKVVD KVTGTIQEAN 960 IPQTQEKIDQ YLSFSKPKLN KLVQAYVEKV QKG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.21529 | 0.0 | flower| leaf| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g095960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009568 | 0.0 | CT009568.8 M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602587.2 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634891.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634892.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634893.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634894.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634895.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_024634896.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
TrEMBL | G7JBH8 | 0.0 | G7JBH8_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein, putative | ||||
STRING | AES72838 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-12 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g095960.2 |
Entrez Gene | 11435032 |
Publications ? help Back to Top | |||
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