PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g095960.2
Common NameMTR_3g095960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 994aa    MW: 111422 Da    PI: 7.8875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g095960.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07143165326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      t++Cr+fa  G C++G+ C+F H 
  Medtr3g095960.2 143 TRPCRDFAV-GKCRRGSHCNFLHH 165
                      89*******.*************6 PP

2zf-CCCH216e-07204225426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++CkF H+
  Medtr3g095960.2 204 EACINFAK-GSCRMGASCKFVHD 225
                      78******.*************7 PP

3zf-CCCH17.19.7e-06427448426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ffa  G C+ G  C+F+H+
  Medtr3g095960.2 427 APCKFFAS-GNCRNGKHCRFSHD 448
                      68**5555.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.699140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.001142166IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6143167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638200227IPR000571Zinc finger, CCCH-type
SMARTSM003560.001201226IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4204225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4204225IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4423449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6426448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272428450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MSGTGRKHSS KWDLSDEHKF SPGSKQMRSG RSSADVAGSN SSEWAYLEGN DKLRPVTGFS  60
SKESYYGGRG SNEDDAMHKD HRVFNSRREW DTDGSYSRNM RHSQSPKNDW SRNSRSRSRS  120
PPRGFRWDSG VDGRKRTRVG GSTRPCRDFA VGKCRRGSHC NFLHHDNQNR ENSWEGRPRE  180
DGAPRYSATH ESVDHSLKRG RSNEACINFA KGSCRMGASC KFVHDYDSDG YGKVSMDEFT  240
RERDDEALRY PATHESRDHS LKSGRSNEFI REREDGARRY PATHESRDHS LKSGRSNEFT  300
RERENGGPRY PATYESRDHS PKSGRSNEFT SEREDGAPRY PTTHESRDYS LKSGRSNEFT  360
SEREDGAPRY PTTHESRDYS LKSGRSNDEY GKVFMDEFTR EREVGRRHRD NSFEHGGRHV  420
PNRTIDAPCK FFASGNCRNG KHCRFSHDTQ ACRSPIRRLR DDRWTRNPSR DHQMLDRRKL  480
SDSISPNKRL RDDRWGSDSD MADPDRVEDS PKRNDTVSGS DAAKLIENKN GNVGATEPEF  540
TDLPITDGWG HGLDKSGLHA KPPILSDKKE ADIWIAENTG ANMHGSQSIG TTDIWPGDAE  600
MSPDWNYRMG SSSHMEEHKQ KEHDVSQGGT YLAISEHNGI QLAPGQNINQ NTDNVNPLHT  660
SSYHAVGQSQ VDVPILSSRE GIVDAIHSQE VSTEQKYTGE PNIMDSGLSQ VSSINPPVQN  720
VVSNEQLAQL TNLSASLAHI LGAGQQLPQL YAALNSHELK DSPSQAKTQV PAMPVSITCI  780
KPDPAVELPK QYDPMNDSIE QKNADASGVP PAIPPSKTIA EVEILSQLST PGRENFGNSI  840
KGASSEHVKS DNLIHLQPGQ NTVVNKDNNE EVARERKNSQ DGHKSTKENG PQNMDQNAGP  900
DDAKQTKEMK GSRAFKFALA EFVKELLKPT WKEGKITKED YKTIVKKVVD KVTGTIQEAN  960
IPQTQEKIDQ YLSFSKPKLN KLVQAYVEKV QKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.215290.0flower| leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g095960.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095680.0CT009568.8 M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602587.20.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634891.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634892.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634893.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634894.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634895.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_024634896.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLG7JBH80.0G7JBH8_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein, putative
STRINGAES728380.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-12C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]