PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g095190.1
Common NameMTR_3g095190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 358aa    MW: 39094.3 Da    PI: 9.8714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g095190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20169218255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  Medtr3g095190.1 169 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRG 218
                      8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-33168227IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22169227IPR016177DNA-binding domain
CDDcd000185.25E-22169228No hitNo description
PfamPF008477.8E-14169218IPR001471AP2/ERF domain
SMARTSM003803.3E-36169232IPR001471AP2/ERF domain
PROSITE profilePS5103225.62169226IPR001471AP2/ERF domain
PRINTSPR003671.2E-11170181IPR001471AP2/ERF domain
PRINTSPR003671.2E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MCMVKVANSK DKVVIKSEFN DHTKLSTEMI FPGLNRDREM SAMISALTHI VSGDVPTQSD  60
ADIVHHNSAI EGRVAFATNI NNNMSSPSTT QSLSSPSSSC SSLKRTREDD RFVGDFKFLG  120
GSSPALPTTI AESSSINRTT TRITREMGNA VYEYKRTENV VREGEAKRKY RGVRQRPWGK  180
WAAEIRDPFK AARVWLGTFE TAEAAARAYD EAALRFRGNK AKLNFPENVT LRNPPPATTT  240
TQWNVSNSPS SIVSITTSTD PVVHTRPFPN SSQHSTNFYD RFQFSGIPPA RNVYDDNVIR  300
ASSMASHLQS SSSSPASSLS SSSSAFVSSM QGNTSVSSYF STQLPPWSTS DQSSSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-24168229163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.223730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g095190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196050.0CU019605.7 M.truncatula DNA sequence from clone MTH2-6C22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602514.10.0ethylene-responsive transcription factor ERF110
TrEMBLG7JAD30.0G7JAD3_MEDTR; AP2 domain class transcription factor
STRINGAES727650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-26ethylene response factor 110
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]