PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g094690.1 | ||||||||
Common Name | MTR_3g094690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26174.8 Da PI: 8.5836 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.3 | 8.5e-41 | 47 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael Medtr3g094690.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEL 140 7********************************************************************************************* PP DUF260 95 allkee 100 +ll+ e Medtr3g094690.1 141 NLLRGE 146 *99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.953 | 46 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-40 | 47 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSRERERFDE IGKKIKREGD HDVSNSSNQM GRRHMLGPPG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVAECSR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQVQSLQAEL NLLRGEILKY KLREAANINM NMNMNMNNMI PSSHQLAMLP 180 SNSSVAVSIA APPPPPPPLP PPPISSTTSN SSSSIYFQQR DPNYNTISSD DNISYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-43 | 39 | 158 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-43 | 39 | 158 | 3 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g094690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-55 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602464.1 | 1e-176 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 9e-82 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | G7J9S3 | 1e-175 | G7J9S3_MEDTR; Fission regulator | ||||
STRING | AES72715 | 1e-175 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-80 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g094690.1 |
Entrez Gene | 11418509 |
Publications ? help Back to Top | |||
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