PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g093900.1
Common NameMTR_3g093900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 571aa    MW: 63494.6 Da    PI: 5.1459
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g093900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.69.1e-101253142
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     k ien ++r++ + +R +g++ K e + +LC++e++ i+f++
  Medtr3g093900.1 12 KLIENATQRKIRYMNRVEGLFTKMEQVKTLCGIEACAIVFGP 53
                     569*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.124452IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-7463IPR002100Transcription factor, MADS-box
CDDcd002665.41E-18688No hitNo description
SuperFamilySSF554555.1E-15697IPR002100Transcription factor, MADS-box
PfamPF003191.8E-91454IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVEIRKRKIT SKLIENATQR KIRYMNRVEG LFTKMEQVKT LCGIEACAIV FGPGDSRPSV  60
WPSPHVAKKL IHKFEYMPTS VRSRNMTDQL TYVVEKGKKL DANLAKINKY NEETLLRVSV  120
HQILNEGKSI SDFNASMKNN LIDFLLERIK IVRKKTDYFE KAMFPLNKPP SLPPPMSCAI  180
NNDNMTDFRI NINKEVLNQQ PLLDLAKQVD QMGDGFNPGG GGSVGDMLVN QENFEGFYNN  240
IYSNTEIRPH TYFGGGVDLA SSQGNLKDFD SRMEITSDKY LNGSVDDILL PRGNSGGFDA  300
SLSSSMEIPP HVSHGDGVDI MLPQGNFGGF ELNTSGNMWI PPHENSSGNV DALFPHFSFR  360
GQNNFESFDK NTGSNMWTPS HENPNVDVDA LIFTQNYGGQ CNFEGFDNIT YHNMWTPSHE  420
NPSDGVEMFI PNVETIGQGS FKGFDNNTNT KMEISPHANH SGGIDVVLPQ WNFKGSDNNV  480
GTNVEVSLHA NSSDDVDLLS HQGIFEGFDN NTSSVMWIPP RKNHRDGDNT RIRCQNNIGG  540
NLDEYGMGSA NPNSVDNNDG SNFNQGLSFE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g093900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072V0I70.0A0A072V0I7_MEDTR; MADS-box transcription factor family protein, putative
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.17e-22AGAMOUS-like 90
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]