PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g093040.1
Common NameMTR_3g093040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 313aa    MW: 35072.7 Da    PI: 6.0758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g093040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.7e-501082341127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+++yL+ k++g+  e+ +vi+e+d++k+ePwd+p  + +k ++ ew+fF+++d++y++g+r nr t++gyWkatgkd+++
  Medtr3g093040.1 108 LPLGFRFRPTDEELIDYYLRLKINGNGDEV-QVIREIDVCKWEPWDMPdlSVIKDNDPEWFFFCPQDRQYPNGNRLNRETNHGYWKATGKDRKI 200
                      699************************999.99**************96336777778************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      +s ++ l+g+kktLvfy  rap+g++++Wvmheyr
  Medtr3g093040.1 201 KS-GTILIGMKKTLVFYISRAPNGRRSNWVMHEYR 234
                      **.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.630.102.4E-28190No hitNo description
SuperFamilySSF531872.36E-18184No hitNo description
PfamPF015463.8E-81144IPR002933Peptidase M20
SuperFamilySSF1019416.54E-6099258IPR003441NAC domain
PROSITE profilePS5100554.219108258IPR003441NAC domain
PfamPF023652.3E-27109234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHACGDDAHA TMLLGAAKLL NRRKNKLKGT VRLLFQPAEK ELEPRGASQE RSRGASQMIK  60
EGVLQDVEAI FAVHTDATAS TGNIASIPGP FTAAGCIFEM VTLSLISLPL GFRFRPTDEE  120
LIDYYLRLKI NGNGDEVQVI REIDVCKWEP WDMPDLSVIK DNDPEWFFFC PQDRQYPNGN  180
RLNRETNHGY WKATGKDRKI KSGTILIGMK KTLVFYISRA PNGRRSNWVM HEYRPTLEEL  240
DGTNPGQKAY VLCRLFKKND ESLEVSNCGE GEQTNSAPEE LQSDPAPITV STSQVRQEDK  300
QQAVIPGISE EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45972626169NO APICAL MERISTEM PROTEIN
1ut4_B2e-45972626169NO APICAL MERISTEM PROTEIN
1ut7_A2e-45972626169NO APICAL MERISTEM PROTEIN
1ut7_B2e-45972626169NO APICAL MERISTEM PROTEIN
4dul_A2e-45972626169NAC domain-containing protein 19
4dul_B2e-45972626169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g093040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194151e-154AC119415.13 Medicago truncatula clone mth2-27n2, complete sequence.
GenBankAC1267891e-154AC126789.20 Medicago truncatula clone mth2-36n23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634239.10.0protein NTM1-like 9 isoform X2
SwissprotF4JN353e-86NTL9_ARATH; Protein NTM1-like 9
TrEMBLG7J9290.0G7J929_MEDTR; M20/M25/M40 family peptidase
STRINGAES726620.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-88NAC transcription factor-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  3. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]