PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g092330.1 | ||||||||
Common Name | MTR_3g092330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GRF | ||||||||
Protein Properties | Length: 541aa MW: 58405.4 Da PI: 8.087 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69.2 | 5.1e-22 | 160 | 203 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+e grC+RtDGKkWRCs++v ++ +CErH+hrgr rsrk++e Medtr3g092330.1 160 DPEAGRCKRTDGKKWRCSKDVALNNRYCERHMHRGRPRSRKPVE 203 79***************************************987 PP | |||||||
2 | QLQ | 53.3 | 8.2e-19 | 113 | 143 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FT aQ+ +L++Q+++yKyL+a++PvP++Ll Medtr3g092330.1 113 PFTSAQWRELERQAMIYKYLMASLPVPSHLL 143 9*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.5E-8 | 112 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.615 | 113 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.1E-13 | 113 | 143 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.67 | 160 | 204 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.4E-18 | 161 | 203 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MGEFRVQDKE PKKKTNIVVG SVQSFEGFSN NHHHRSFFHN HDSSSASAAD ADGYGPTTYN 60 MSFGGDSSAL GANAIIDNGG VSLNFQPFHN ISASNTTLKA GGMAASIGIG YPPFTSAQWR 120 ELERQAMIYK YLMASLPVPS HLLSLDGGFN LRLSNRNNTD PEAGRCKRTD GKKWRCSKDV 180 ALNNRYCERH MHRGRPRSRK PVELHTNNNS NSHHQIKKAR CDSNPFSVPD FTVAVPNPTT 240 RKYGSSSHFL ASTPLHPYLQ SSLSLHNSSF EGSNKQPRGL EWMLNGDPIS LGASNSGWNP 300 LMHNNKLGMT NESSYHNNTE SQYLNSFPLY NSSELAQHEK PFPLLLNPLV VPMQTLQSEK 360 PRGFSFIDAW SNTETVENNA NTTTTSNNGS ASVGKLSLSS LDLSMGGSAV SEEMSTIEMN 420 AAGDDDSTKI ALSNWLNSAQ PWLGSTPGGP LAEVLRPSNV TSISDATNSN PSSPLTTTNR 480 VESIGTSGTG MVSSPSGVLH NKTLASFSDS SGNSSPNVAS SRANSEIALL NKFNHISYVN 540 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g092330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009540 | 0.0 | CT009540.10 M.truncatula DNA sequence from clone MTH2-39B3 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602338.1 | 0.0 | growth-regulating factor 3 isoform X1 | ||||
TrEMBL | G7J891 | 0.0 | G7J891_MEDTR; Growth-regulating factor | ||||
STRING | AES72589 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 7e-33 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g092330.1 |
Entrez Gene | 11444759 |
Publications ? help Back to Top | |||
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