PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g092150.1 | ||||||||
Common Name | MTR_3g092150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 246aa MW: 29045.2 Da PI: 5.2031 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe+++++ +++ +LA+ lgL+ rqV +WFqNrRa++k Medtr3g092150.1 39 KRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 91 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122 | 2.9e-39 | 37 | 129 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+s+eq+++LE Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ + L++e+e+L++e+++ Medtr3g092150.1 37 ENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQK 129 58***************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-18 | 22 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 24 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 36 | 97 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-17 | 39 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-13 | 40 | 94 | No hit | No description |
PRINTS | PR00031 | 8.7E-6 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-6 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-11 | 93 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MMEEEENIHE GFKGKNVESM SCLETPQNSK KKNKKIENKR RFSDEQIRSL ECIFESESKL 60 EPRKKMQLAR DLGLQPRQVA IWFQNRRARW KSKRIEQEYR KLKDEYDNLA SKFQCLKEEK 120 ESLQSEVQKL SYMVETSHDG GREAKENSTE DGGSRNGYNN SRFEETKQRF SNEGLEDKVV 180 IYSDDQNERS TTWTEKVEDR GNQLLRNDDH AEIPLTTTLE KWYNVDPCGM LDQSCNSSQW 240 LDFWT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g092150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302248 | 0.0 | CU302248.6 M.truncatula DNA sequence from clone MTH2-33P23 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602321.2 | 0.0 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | G7J874 | 0.0 | G7J874_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | AES72572 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 8e-45 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g092150.1 |
Entrez Gene | 11433908 |
Publications ? help Back to Top | |||
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