PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g091700.1 | ||||||||
Common Name | MTR_3g091700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 262aa MW: 30601.1 Da PI: 7.9904 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.4 | 3.4e-24 | 152 | 201 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++d++k+F+ pi+ AAk+L+v++T LK++CR+++I RWPhRk++sl Medtr3g091700.1 152 SSLQFDDIKKHFDVPITMAAKKLNVGVTFLKKRCRELNITRWPHRKLRSL 201 689*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.586 | 141 | 223 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-21 | 154 | 201 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDFFTQPEIT QSFNWFCNVQ PQQNDTDKIM GIAPFDDFFE FDWATQFSYQ SNHFYMNDFD 60 DLENFNFDFN LPHLDQNNFE VDKKPLNVVL PELGHYNHKG ETVGYVEASV KTESGFVSFV 120 KKENEWENQE LSSLVPLALQ SSSTSIIRKR SSSLQFDDIK KHFDVPITMA AKKLNVGVTF 180 LKKRCRELNI TRWPHRKLRS LMLLIDNLKD KGLTKEVAML EKQKKMLEKL PGMHLNDEIK 240 KLRQACFKAN YKNRKLIALC P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g091700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR956619 | 0.0 | CR956619.7 M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024633826.1 | 1e-150 | protein RKD4 | ||||
TrEMBL | G7J7G0 | 0.0 | G7J7G0_MEDTR; Putative transcription factor Nin-like family | ||||
STRING | AES72521 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-32 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g091700.1 |
Entrez Gene | 11444215 |
Publications ? help Back to Top | |||
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