PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g090760.1
Common NameMTR_3g090760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 356aa    MW: 39729.2 Da    PI: 4.375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g090760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19111161155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ kl+g
  Medtr3g090760.1 111 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 161
                      59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-33111168No hitNo description
SuperFamilySSF541712.48E-21112169IPR016177DNA-binding domain
SMARTSM003802.4E-38112175IPR001471AP2/ERF domain
PROSITE profilePS5103223.578112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-30112168IPR001471AP2/ERF domain
PfamPF008474.6E-12112161IPR001471AP2/ERF domain
PRINTSPR003672.4E-10113124IPR001471AP2/ERF domain
PRINTSPR003672.4E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEKQSILCKY TEHETVTKKL ITTKKNGHSN NNNNTTINPR VVRISVTDPD ATDSSSDEEG  60
QIQTFRNRTK RYINRIEIET TTKAVVSRKR PAGETSTVRR PAKIPAVNNG KKFRGVRQRP  120
WGKWAAEIRD PARRVRLWLG TFETAEEAAM VYDNAAIKLR GPDALTNFLT PPLKEDIPVE  180
PSTVKPEMKV VVDADVEGEA SGLGNSGYDS GEEICVPLSS PTSVLNFRSN SGEEEQSEAC  240
EVFRDCQGET TTNLFDETAS FFQQDMPCWD DVFNFQTPDF PTLFEEDSNK MMFEENTTPF  300
LFDEDLSDSI VLADSLIDFE KACFPSPSSS STTSLCQVDD FFQDILLGSD PLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23110174365ATERF1
3gcc_A1e-23110174365ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RNRTKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.238950.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g090760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682630.0CU468263.9 M.truncatula DNA sequence from clone MTH2-35G2 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602186.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLG7J6930.0G7J693_MEDTR; Ethylene response factor
STRINGAES724370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-54cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]