PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g086100.1
Common NameMTR_3g086100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 571aa    MW: 64565.8 Da    PI: 6.1772
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g086100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.71.3e-23199252155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ L++e+v+SHLQkYRl
  Medtr3g086100.1 199 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLSRENVASHLQKYRL 252
                      68*******************.9*******************************8 PP
2Response_reg81.33.1e-27191271109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ +++l+++l+k +y ev+++  ++ al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Medtr3g086100.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 110
                      89*********************.***************999999**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el++
  Medtr3g086100.1 111 GACDYLLKPIRMKELRN 127
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.2E-4416152No hitNo description
SuperFamilySSF521721.99E-3516145IPR011006CheY-like superfamily
SMARTSM004481.6E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.10618133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.54E-2920133No hitNo description
Gene3DG3DSA:1.10.10.604.5E-27196257IPR009057Homeodomain-like
SuperFamilySSF466891.63E-16197256IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-21199252IPR006447Myb domain, plants
PfamPF002493.0E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDNGCFSSPR RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKRIHEV REFENFESFE SMHLMRNGSE MSEEGNLFAL EDMTSTKKRK  180
DVDSRHDDKE FLDSSSSKKA RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLSR  240
ENVASHLQKY RLYLSRLQKD NEQKSSSSGM KHSDLPSKDV GNFGFPNSAN KQQNDASIDK  300
YNYSEGSLQH QNIETKSHEG NPKGIVPHST AAEKARALTG NITDATDTAL NKPFAPLESE  360
RKRGAFDCNM STPYSWTEIP KTQLKKEQKS VVHLEDKFNL LPLNGKQHNI QVDQSQSIAS  420
ISSTPSITEQ DVAACVETKP TFSDYKKDYT SSVSSIRSSV DTFPFQPGSL MMNDQPTQPI  480
STTNFGLKTQ TSNLSCISDL ESYQRNLLLG GEAASAPLDE DLYFYWHNMN FGQQNIGMSE  540
YYDPGLLIEV PNHLYDSADY SVIDQGLFIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17195257163ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.82340.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g086100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405050.0BT140505.1 Medicago truncatula clone JCVI-FLMt-22H12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601849.10.0two-component response regulator ARR11 isoform X1
TrEMBLG7J2J30.0G7J2J3_MEDTR; Putative response regulator and transcription factor RR-B-type family
STRINGAES721000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]