PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g085960.1
Common NameMTR_3g085960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 391aa    MW: 44613.1 Da    PI: 6.2513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g085960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix872.2e-2777161286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s+s  +++ +++++
  Medtr3g085960.1  77 WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGGSGSGGKMSCYKEID 161
                      **********************************************************************999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.45569133IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-470135IPR009057Homeodomain-like
SMARTSM007170.001573135IPR001005SANT/Myb domain
CDDcd122032.01E-2875140No hitNo description
PfamPF138371.7E-2076163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MYLSSEKPRP IDFYKEEARD MMMEVVTNTD LQPPPPPPSQ HHHHLQQQQP QMILTAESSG  60
DDPEMEIKAP KKRAETWVQD ETRSLIGLRR EMDSLFNTSK SNKHLWEQIS AKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK HHDRGGGSGS GGKMSCYKEI DEILRERSKC GQYKNVVTPT  180
SKVESSYMQF DKGIDDANIS FGPVEASGRP TLNLERSLDH DGHPLAIAAA DVAASGVPPW  240
NWRETPGNGG ESQSCCGRVI SVKWGDYTRR IGIDGTPEAI KEAIRAAFRL RTKRAFWLED  300
EEQIIRSIDR DMPIGNYTLH LDEGMAIKVC LYDESDHIPV HTEEKIFYTE DDYRDFLARR  360
AWTGLREFDG YRNIDNMDDL RPGAIYRGVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A6e-4771159186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.214480.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g085960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367840.0BT136784.1 Medicago truncatula clone JCVI-FLMt-18L18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601834.10.0trihelix transcription factor GT-4 isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLG7J2H90.0G7J2H9_MEDTR; Putative transcription factor MYB family
STRINGAES720850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-175Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]