PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr3g085430.1 | ||||||||
Common Name | MTR_3g085430, NF-YC9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 174aa MW: 19393.3 Da PI: 5.4935 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 49.6 | 8.5e-16 | 25 | 109 | 13 | 97 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + f + e+P +r+kki+ d+dvk++s+ea l+s++ elf+ l+ +s a e+kr+t+k + av+r i dfl+d p Medtr3g085430.1 25 TLSF-EPEFPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIEKKRKTVKLEHMRIAVKRNRpISDFLLDSLP 109 3444.568***************************************************************9875489*****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.59E-17 | 29 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-18 | 31 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-18 | 32 | 109 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MILYDKRNEL GIVIATVMGE EEEKTLSFEP EFPKSRVKKI ITLDKDVKRV SSEALFLVSR 60 STELFLQLLA EKSAEVAIEK KRKTVKLEHM RIAVKRNRPI SDFLLDSLPV PSETVKSDKP 120 AAVVDRPKSV SVGTRRIDQI FRKSGGDVEA QAQAQAPAPE PEPEPEPEPM EEA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.3304 | 0.0 | flower |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr3g085430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT142450 | 0.0 | BT142450.1 Medicago truncatula clone JCVI-FLMt-5P5 unknown mRNA. | |||
GenBank | CT737180 | 0.0 | CT737180.5 M.truncatula DNA sequence from clone MTH2-117L19 on chromosome 3, complete sequence. | |||
GenBank | JQ918301 | 0.0 | JQ918301.1 Medicago truncatula nuclear transcription factor Y subunit C9 (NF-YC9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003601792.1 | 1e-119 | DNA polymerase epsilon subunit C | ||||
TrEMBL | G7JC00 | 1e-118 | G7JC00_MEDTR; Nuclear transcription factor Y protein | ||||
STRING | AES72043 | 1e-119 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-42 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr3g085430.1 |
Entrez Gene | 11441062 |
Publications ? help Back to Top | |||
---|---|---|---|
|