PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g085050.1

Common Name

MTR_3g085050

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

CAMTA

Protein Properties

Length: 959aa MW: 107843 Da PI: 5.5527

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g085050.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.6	3e-50	14	129	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e kkrwlk+ e++ iL+n++ ++t + ++p+ gs+ L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+een++fq Medtr3g085050.1 14 QEaKKRWLKPIEVLYILQNHDTCKFTDFPLNQPRGGSVYLFNKRVMRFFRKDGHNWRKKKDGRTVSEAHERLKVGNVEALNCYYAHGEENRSFQ 107 5669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e++vlvhy+e+ Medtr3g085050.1 108 RRSYWMLNPEYEHVVLVHYRET 129 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.624	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.3E-63	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.3E-44	15	128	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.96E-15	389	473	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.5E-5	389	466	IPR002909	IPT domain
Gene3D	G3DSA:2.60.40.10	8.1E-6	389	462	IPR013783	Immunoglobulin-like fold
CDD	cd00102	3.82E-5	389	473	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.7E-16	585	680	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.91	586	680	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.31E-17	588	680	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.1E-8	603	680	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.21E-13	606	678	No hit	No description
PROSITE profile	PS50088	11.114	619	651	IPR002110	Ankyrin repeat
SMART	SM00248	0.0048	619	648	IPR002110	Ankyrin repeat
SMART	SM00248	470	658	687	IPR002110	Ankyrin repeat
SMART	SM00015	17	736	758	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.55E-12	737	838	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.114	737	765	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.055	786	808	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	787	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.4E-4	788	807	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.023	809	831	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.011	811	834	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	812	831	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MLPGLQYNIN DLFQEAKKRW LKPIEVLYIL QNHDTCKFTD FPLNQPRGGS VYLFNKRVMR 60 FFRKDGHNWR KKKDGRTVSE AHERLKVGNV EALNCYYAHG EENRSFQRRS YWMLNPEYEH 120 VVLVHYRETN EGTSNSGPVT QSSPFSQSRS SYTTPNPETT STVGDSCEPN QNFSSPGFLE 180 VTSDIVIMNN GTDHVEKTNA QALRQLEEQL SLNDDSFTEI PPFYSEHEIP VAFAEPDDHK 240 QPYDGYNGTK DCSGNRYREL LDHDFPGGHE KTLSWTEMLE SSKSSFVNKL PEQHAYKEFE 300 NETPLSSFGR EMIANQETSY RIHPNSNNDE NSWFLLPQDT GGVQFSPYSS IETQGTNSDY 360 YETLFDQSQI QEPRDAYSSL TVGQKQKFTI TAVSPEYCYA NEATKVIIVG SFLCLPSDST 420 WACMFGDVEV PTEIIQDGVI CCEAPSHLLG KVALCITSGN KEPCSEIKEF EFRNKTNSCI 480 HCNVLETEVA HSPEELLLLV RFAEMLLSAS TIKDDSSESG GQFSTEQKAD DDSWSHIIDA 540 LLVGNVTSSG TINCLLQELL KDKLRHWLSC RSNERDEDAG CSLSKKEQGI IHIVSGLGFE 600 WALNPILSCG MNVNFRDING WTALHWAARF GREKMVTSLI AAGASAGAVT DPSSQDPNGK 660 TAASIAASNG HKGLAGYLAE VDLTSHLSSL TLEKCEVPKD SSELEAELTV SSVSKKNLEA 720 SDDEDSLKNT LGAVRNAAQA AARIQAAFRA HSFRKQMERE AASTTCLNGY VTGLGGIGGY 780 VRSSRDYHSA ALSIQKKYRG WKVRKEYLAF RQKVVTIQAH VRGYQTRRQY KLMIWAVGIL 840 DKVVLRWRRK RVGLRSSPQE IDSKEETDDE DFLKVFRQEK VHAAIQKALA RVISMVSSVP 900 ARHQYNRMLG MRRRAEAEHG NTSDEMETRL STSVDDAWNI DDAWNIEDDD LYQFPWAL*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MLPGLQYNIN DLFQEAKKRW LKPIEVLYIL QNHDTCKFTD FPLNQPRGGS VYLFNKRVMR  60
FFRKDGHNWR KKKDGRTVSE AHERLKVGNV EALNCYYAHG EENRSFQRRS YWMLNPEYEH  120
VVLVHYRETN EGTSNSGPVT QSSPFSQSRS SYTTPNPETT STVGDSCEPN QNFSSPGFLE  180
VTSDIVIMNN GTDHVEKTNA QALRQLEEQL SLNDDSFTEI PPFYSEHEIP VAFAEPDDHK  240
QPYDGYNGTK DCSGNRYREL LDHDFPGGHE KTLSWTEMLE SSKSSFVNKL PEQHAYKEFE  300
NETPLSSFGR EMIANQETSY RIHPNSNNDE NSWFLLPQDT GGVQFSPYSS IETQGTNSDY  360
YETLFDQSQI QEPRDAYSSL TVGQKQKFTI TAVSPEYCYA NEATKVIIVG SFLCLPSDST  420
WACMFGDVEV PTEIIQDGVI CCEAPSHLLG KVALCITSGN KEPCSEIKEF EFRNKTNSCI  480
HCNVLETEVA HSPEELLLLV RFAEMLLSAS TIKDDSSESG GQFSTEQKAD DDSWSHIIDA  540
LLVGNVTSSG TINCLLQELL KDKLRHWLSC RSNERDEDAG CSLSKKEQGI IHIVSGLGFE  600
WALNPILSCG MNVNFRDING WTALHWAARF GREKMVTSLI AAGASAGAVT DPSSQDPNGK  660
TAASIAASNG HKGLAGYLAE VDLTSHLSSL TLEKCEVPKD SSELEAELTV SSVSKKNLEA  720
SDDEDSLKNT LGAVRNAAQA AARIQAAFRA HSFRKQMERE AASTTCLNGY VTGLGGIGGY  780
VRSSRDYHSA ALSIQKKYRG WKVRKEYLAF RQKVVTIQAH VRGYQTRRQY KLMIWAVGIL  840
DKVVLRWRRK RVGLRSSPQE IDSKEETDDE DFLKVFRQEK VHAAIQKALA RVISMVSSVP  900
ARHQYNRMLG MRRRAEAEHG NTSDEMETRL STSVDDAWNI DDAWNIEDDD LYQFPWAL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.7556	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g085050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147538	0.0	AC147538.24 Medicago truncatula clone mth2-135c7, complete sequence.
GenBank	CU571154	0.0	CU571154.3 M.truncatula DNA sequence from clone MTH2-59O16 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003601756.2	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	G7JBF2	0.0	G7JBF2_MEDTR; Calmodulin-binding protein
STRING	XP_004502279.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Medtr3g085050.1
Entrez Gene	11443052

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]