PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g083540.1
Common NameMTR_3g083540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 304aa    MW: 33756.2 Da    PI: 7.3439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g083540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-164390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde l +++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Medtr3g083540.1 43 RGPWTVEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 90
                     89******************************99************97 PP
2Myb_DNA-binding47.15.5e-15101141648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Medtr3g083540.1 101 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 141
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-213492IPR009057Homeodomain-like
PROSITE profilePS5129416.6283890IPR017930Myb domain
SuperFamilySSF466899.54E-2940137IPR009057Homeodomain-like
SMARTSM007172.4E-124292IPR001005SANT/Myb domain
PfamPF002497.2E-144390IPR001005SANT/Myb domain
CDDcd001672.23E-104590No hitNo description
PROSITE profilePS5129424.39791145IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2493146IPR009057Homeodomain-like
SMARTSM007172.7E-1395143IPR001005SANT/Myb domain
CDDcd001671.43E-11101141No hitNo description
PfamPF002499.1E-14101141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNLSSSTDQD KSETTNSNSN SNPNKKQKTT TTTPCCSKVG LKRGPWTVEE DEVLSEYIKK  60
EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGQIA PDEEDLILRL HRLLGNRWSL  120
IAGRIPGRTD NEIKNYWNTH LSKKLINQGI DPRTHKPLNN PSSSSSIIPN TNHQTSTPFF  180
APSSSDHHHP ITITNNEPDP SQTQQAQGCG NLVNDVSAMD NHHVLTNNNR GDYGDDNGNN  240
NYGGDDVFTS FLDSLINDDA FAAHRSENDP LILSAAPPAL WESPPLMMTS THNFTQNQDG  300
KAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25411455108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g083540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467600.0AC146760.13 Medicago truncatula clone mth2-174d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601609.30.0transcription repressor MYB5
SwissprotQ388507e-86MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A396ITS40.0A0A396ITS4_MEDTR; Putative transcription factor MYB-HB-like family
TrEMBLG7J9M10.0G7J9M1_MEDTR; Myb transcription factor
STRINGAES718600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-78myb domain protein 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]