PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g082630.1
Common NameMTR_3g082630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 412aa    MW: 45277.1 Da    PI: 4.653
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g082630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C+ +++++   +C+++  +lC +C  + H+       H++
  Medtr3g082630.1  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAntlarrHSR 44
                     7*****************************65667767765 PP
2zf-B_box22.91.8e-074688441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                       C++++++++   C + ++ lC++C   +H +     H++++
  Medtr3g082630.1 46 LLCERCSSQPALVRCSEEKVSLCQNCDWLGHGNstssnHKRQT 88
                     57*****************************558999999876 PP
3CCT60.74.9e-21354397144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R  a++RYkeK+ktRkF+K++rY+sRK++A+ R RvKGrFvk+ 
  Medtr3g082630.1 354 RCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAG 397
                      6689*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000217.39E-7447No hitNo description
SMARTSM003361.3E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.2434389IPR000315B-box-type zinc finger
CDDcd000212.83E-44789No hitNo description
SMARTSM003360.554889IPR000315B-box-type zinc finger
PfamPF062037.3E-16354396IPR010402CCT domain
PROSITE profilePS5101715.209354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANTLAR RHSRTLLCER CSSQPALVRC  60
SEEKVSLCQN CDWLGHGNST SSNHKRQTIN CYSGCPSSAE LSSIWSFVLD IPSLSETTCE  120
QELGFMSINE NRSAWVDPKN QNVSDSDKAT DLPDLDKSFA GTSSMPESSK EPRMLDRPDG  180
STNECVPKLY CPATNCREAS DDDDDLYGDF DMDEMDINME NYDELFGMAL THSEELFENG  240
GFNSLFGAKA MSAGDSNCQD ANAAEGSSIG HVNAAQPACS TAASADSILS TKTEPNLCIT  300
AKQSQSSLSF SGINEDGGAG DYQDCGASSM LLMGEPPWLN TCPENELQLQ SANRCSAVMR  360
YKEKKKTRKF DKRVRYASRK ERADVRRRVK GRFVKAGEAY DYDPLSQTRS Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98360.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g082630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436830.0BT143683.1 Medicago truncatula clone JCVI-FLMt-20N9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601522.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024635538.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024635539.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-142COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLG7J8U10.0G7J8U1_MEDTR; B-box type zinc finger protein
STRINGAES717710.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-118CONSTANS-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]