PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g077110.1
Common NameMTR_3g077110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 350aa    MW: 39939.9 Da    PI: 5.9982
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g077110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.71.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  Medtr3g077110.1 14 KGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.77.3e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
  Medtr3g077110.1  67 RGMFSKQEEDLIINLHEALGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-24664IPR009057Homeodomain-like
PROSITE profilePS5129424.365965IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007173.4E-121363IPR001005SANT/Myb domain
PfamPF002492.5E-141461IPR001005SANT/Myb domain
CDDcd001671.81E-101761No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129418.9566116IPR017930Myb domain
SMARTSM007174.2E-1466114IPR001005SANT/Myb domain
PfamPF002496.8E-1467110IPR001005SANT/Myb domain
CDDcd001673.00E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRHFCSLKQ KLRKGLWSPE EDEKLFNYIT MFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SKQEEDLIIN LHEALGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPATHKPFI NNIESLIKEE KEKPSMIMPL SHSQPQRILA THTMLESSHD YSESLLMSDL  180
INHYNIGGLA LTEASRIFLM NNPTLDFDPL YYNSSLINYY QPSLLQFEQN QFGNNSSYFF  240
SSMPCLNSSE FSDNINNSVS KFSSPLVNES SSNSTSTMSD YYQISNMINE NAGGLISWEG  300
EEFINKTSSW QEGQLLSHNN SIDFSTYPLT SLSEDLSNIE ANFDVFHHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
1h8a_C8e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g077110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1478770.0AC147877.10 Medicago truncatula clone mth2-9b13, complete sequence.
GenBankCU2341130.0CU234113.3 M.truncatula DNA sequence from clone MTH2-16M17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601199.10.0transcription factor MYB61
TrEMBLG7J4T20.0G7J4T2_MEDTR; Myb transcription factor
STRINGAES714500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-79myb domain protein 86
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]