PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g075190.1
Common NameMTR_135s0022, MTR_3g075190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 512aa    MW: 56845.1 Da    PI: 4.802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g075190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.75.9e-11178200426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+f+++tGtCk+G +CkF+H+
  Medtr3g075190.1 178 EDCSFYLKTGTCKFGFNCKFNHP 200
                      89********************9 PP
2zf-CCCH28.62.4e-09225246425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       +C++++r+G Ck+G  CkF H
  Medtr3g075190.1 225 TECKYYSRSGGCKFGKDCKFDH 246
                      58******************** PP
3zf-CCCH41.32.5e-13270293326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C++++rtG Ck+G++CkF+H+
  Medtr3g075190.1 270 EKECPYYMRTGSCKFGANCKFNHP 293
                      689********************9 PP
4zf-CCCH261.6e-08404430127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+ff++tG Ck+ + CkF+H++
  Medtr3g075190.1 404 PGEPECSFFLKTGDCKFKSHCKFHHPK 430
                      5799*********************96 PP
5zf-CCCH31.43.3e-10451475226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C +++r+G+Ck+G+ Ck+ H+
  Medtr3g075190.1 451 GQNVCTHYSRYGICKFGPACKYDHP 475
                      6678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126174202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6174204IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5174201IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4180199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629221249IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4221248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5224250IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7225246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4227248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601267295IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6268294IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-11270293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5273292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76403431IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012403430IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6405430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5408433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6447475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643449477IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5449476IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8451475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEPSQQSQSH LISSHVQHIS PVSNHHPPEP SDLNQLAQLD DELQNKLDLK DEDVIEEKGS  60
NFEVGHEVAV LESDKGQGCH DDDENVNEKV STDVDEVGGI DDKGSNFEVD DETSATVSEK  120
GQGFHQVDVD DDDGWNGDYD GWNDDNEVSD WIENEVSGDV DERSNGGAEQ YPLRPEAEDC  180
SFYLKTGTCK FGFNCKFNHP LGRRNQVFRE RAGERDELEE RSSQTECKYY SRSGGCKFGK  240
DCKFDHTRGK FSADQVLELN FLGLPIRLGE KECPYYMRTG SCKFGANCKF NHPDPTSVGG  300
YDSTAGYGNG STTSLQDVSQ SSTPPWSSTR KFNETAPFVP IIISPTPGAS PRSSDWNGYQ  360
APFYLSERSM HPPSPYAVNN PAMEMNAYMH RHKHTPVEEF PERPGEPECS FFLKTGDCKF  420
KSHCKFHHPK NRITKLPPCN LSDKGLPLRP GQNVCTHYSR YGICKFGPAC KYDHPINLPP  480
PTMPGRYQQS SHTNSASIEE AGSAGASDAT I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.96470.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g075190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357530.0AC235753.2 Medicago truncatula clone mth2-128c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460953.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-126C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLG8A2H70.0G8A2H7_MEDTR; Putative transcription factor C3H family
STRINGAES856650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]